5IWA
Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | 30S ribosomal protein S2 | polymer | 226 | 26159.3 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus HB8 | |
| 2 | B (C) | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus HB8 | |
| 3 | C (D) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus HB8 | |
| 4 | D (E) | 30S ribosomal protein S5 | polymer | 157 | 17067.8 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus HB8 | |
| 5 | E (F) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus HB8 | TS9 |
| 6 | F (G) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus HB8 | |
| 7 | G (H) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus HB8 | |
| 8 | H (I) | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus HB8 | |
| 9 | I (J) | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus HB8 | |
| 10 | J (K) | 30S ribosomal protein S11 | polymer | 115 | 12161.8 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus HB8 | |
| 11 | K (L) | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus HB8 | |
| 12 | L (M) | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus HB8 | |
| 13 | M (N) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus HB8 | |
| 14 | N (O) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus HB8 | |
| 15 | O (P) | 30S ribosomal protein S16 | polymer | 85 | 10152.7 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus HB8 | |
| 16 | P (Q) | 30S ribosomal protein S17 | polymer | 104 | 12194.5 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus HB8 | |
| 17 | Q (R) | 30S ribosomal protein S18 | polymer | 71 | 8313.0 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus HB8 | |
| 18 | R (S) | 30S ribosomal protein S19 | polymer | 83 | 9456.0 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus HB8 | |
| 19 | S (T) | 30S ribosomal protein S20 | polymer | 103 | 11405.7 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus HB8 | |
| 20 | T (V) | 30S ribosomal protein Thx | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus HB8 | S31 |
| 21 | U (A) | 16S ribosomal RNA | polymer | 1509 | 489991.1 | 1 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 22 | AB, AC, AD, AE, AF... (A, O, S, B, E...) | MAGNESIUM ION | non-polymer | 24.3 | 204 | Chemie (MG) | |||
| 23 | BA, W (N, D) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 24 | AA (M) | (2S,3S)-2-{[(2S)-3-(2-amino-1H-imidazol-5-yl)-2-{[(2S,4S)-5-(carbamoyloxy)-4-hydroxy-2-({[(2S,3S)-3-hydroxypiperidin-2-yl]carbonyl}amino)pentanoyl]amino}propanoyl]amino}-3-(2-chloro-1H-imidazol-5-yl)-3-hydroxypropanoic acid | non-polymer | 659.0 | 1 | Chemie (6EK) |
Sequence modifications
A: 4 - 1532 (GenBank: 55771382)
| PDB | External Database | Details |
|---|---|---|
| A 1 | - | expression tag |
| A 2 | - | expression tag |
| A 3 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 763908.8 | |
| Non-Polymers* | Number of molecules | 207 |
| Total formula weight | 5748.1 | |
| All* | Total formula weight | 769656.9 |
