5IRY
Crystal structure of human Desmocollin-1 ectodomain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Desmocollin-1 | polymer | 548 | 61896.7 | 2 | UniProt (Q08554) Pfam (PF00028) | Homo sapiens (Human) | Cadherin family member 1,Desmosomal glycoprotein 2/3,DG2/DG3 |
| 2 | C (C) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | D (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 4 | AA, BA, CA, DA, E... (B, A) | CALCIUM ION | non-polymer | 40.1 | 24 | Chemie (CA) | |||
| 5 | HA, IA, JA, KA, LA... (B, A) | alpha-D-mannopyranose | non-polymer | 180.2 | 9 | Chemie (MAN) | |||
| 6 | U (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 7 | MA, NA (A, B) | water | water | 18.0 | 12 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 542 (UniProt: Q08554)
| PDB | External Database | Details |
|---|---|---|
| His 543 | - | expression tag |
| His 544 | - | expression tag |
| His 545 | - | expression tag |
| His 546 | - | expression tag |
| His 547 | - | expression tag |
| His 548 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 123793.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 2866.6 | |
| All* | Total formula weight | 127246.6 |
