Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IRY

Crystal structure of human Desmocollin-1 ectodomain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-11
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9792
Spacegroup nameC 1 2 1
Unit cell lengths213.806, 66.174, 141.633
Unit cell angles90.00, 127.15, 90.00
Refinement procedure
Resolution19.994 - 3.095
R-factor0.2513
Rwork0.249
R-free0.30190
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3q2v
RMSD bond length0.034
RMSD bond angle1.071
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (dev_1810)
Data quality characteristics
 Overall
Low resolution limit [Å]19.994
High resolution limit [Å]3.095
Number of reflections28445
<I/σ(I)>9.7
Completeness [%]99.1
Redundancy4.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.529330% (w/v) PEG20000, 0.1M Tris-Bicine pH8.5, 5% (v/v) ethyleneglycol, 0.06M Calcium chloride, 20% (w/v) glycerol (cryoprotectant, added before freezing)

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon