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5IHE

D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
DNA polymerase II small subunitpolymer47553614.52UniProt (Q9V2F3)
Pfam (PF00149)
Pyrococcus abyssi (strain GE5 / Orsay)Pol II
2C, I
(A, B)
2'-DEOXYADENOSINE-5'-MONOPHOSPHATEnon-polymer331.22Chemie (D5M)
3D, J
(A, B)
FE (III) IONnon-polymer55.82Chemie (FE)
4E, K
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
5F, H, L
(A, B)
CALCIUM IONnon-polymer40.13Chemie (CA)
6G, M
(A, B)
ACETATE IONnon-polymer59.02Chemie (ACT)
7N
(B)
1,2-ETHANEDIOLnon-polymer62.11Chemie (EDO)
8O, P
(A, B)
waterwater18.066Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight107229.0
Non-Polymers*Number of molecules12
Total formula weight1205.3
All*Total formula weight108434.3
*Water molecules are not included.

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PDB entries from 2026-01-14

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