5HTO
Crystal structure of Plasmodium Vivax LDH in complex with a DNA aptamer called pL1 (tetrameric LDH in an asymmetric unit)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, D, E | L-lactate dehydrogenase | polymer | 346 | 37659.7 | 4 | UniProt (Q4PRK9) Pfam (PF00056) Pfam (PF02866) In PDB | Plasmodium vivax | Lactate dehydrogenase,Parasite lactate dehydrogenase |
2 | C | DNA (34-MER) | polymer | 34 | 10561.8 | 1 | Plasmodium vivax | ||
3 | F | DNA (30-MER) | polymer | 30 | 9327.0 | 1 | Plasmodium vivax | ||
4 | C, F | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
5 | water | water | 18.0 | 898 | Chemie (HOH) |
Sequence modifications
A, B, D, E: 1 - 316 (UniProt: Q4PRK9)
PDB | External Database | Details |
---|---|---|
Met -29 | - | expression tag |
Gly -28 | - | expression tag |
Ser -27 | - | expression tag |
Ser -26 | - | expression tag |
His -25 | - | expression tag |
His -24 | - | expression tag |
His -23 | - | expression tag |
His -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
Ser -19 | - | expression tag |
Ser -18 | - | expression tag |
Gly -17 | - | expression tag |
Leu -16 | - | expression tag |
Val -15 | - | expression tag |
Pro -14 | - | expression tag |
Arg -13 | - | expression tag |
Gly -12 | - | expression tag |
Ser -11 | - | expression tag |
His -10 | - | expression tag |
Met -9 | - | expression tag |
Glu -8 | - | expression tag |
Asn -7 | - | expression tag |
Leu -6 | - | expression tag |
Tyr -5 | - | expression tag |
Phe -4 | - | expression tag |
Gln -3 | - | expression tag |
Arg -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 170527.4 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 48.6 | |
All* | Total formula weight | 170576.0 |