5HTO
Crystal structure of Plasmodium Vivax LDH in complex with a DNA aptamer called pL1 (tetrameric LDH in an asymmetric unit)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-02 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9796 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.512, 86.539, 209.128 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.999 - 1.900 |
R-factor | 0.1706 |
Rwork | 0.169 |
R-free | 0.20010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2a92 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.110 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 25.000 | 25.000 | 1.930 |
High resolution limit [Å] | 1.900 | 5.140 | 1.900 |
Rmerge | 0.083 | 0.042 | 0.288 |
Number of reflections | 122668 | ||
<I/σ(I)> | 16.2 | ||
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 14.6 | 13.8 | 14.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | PEG-20K, magnesium ion, HEPES, Tirs, PEG-400 |