5HDR
Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Alpha-L-fucosidase | polymer | 447 | 51751.6 | 4 | UniProt (Q8A3I4) Pfam (PF01120) In PDB | Bacteroides thetaiotaomicron | |
2 | A, B, C | SULFATE ION | non-polymer | 96.1 | 5 | Chemie (SO4) | |||
3 | A, B, C, D | IMIDAZOLE | non-polymer | 69.1 | 4 | Chemie (IMD) | |||
4 | A, B, C, D | [(1,2,3,4,5-eta)-cyclopentadienyl][(1,2,3,4,5-eta)-1-{3-[4-(3,4-dihydroxy-5-methylpyrrolidin-2-yl)-1H-1,2,3-triazol-1-yl]prop-1-en-1-yl}cyclopentadienyl]iron | non-polymer | 399.2 | 4 | Chemie (H79) | |||
5 | water | water | 18.0 | 445 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 35 - 472 (UniProt: Q8A3I4)
PDB | External Database | Details |
---|---|---|
Ala 34 | - | expression tag |
Lys 473 | - | expression tag |
Gly 474 | - | expression tag |
Thr 475 | - | expression tag |
Lys 476 | - | expression tag |
Ser 477 | - | expression tag |
Ile 478 | - | expression tag |
Tyr 479 | - | expression tag |
Arg 480 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 207006.3 | |
Non-Polymers* | Number of molecules | 13 |
Total formula weight | 2353.5 | |
All* | Total formula weight | 209359.8 |