5H4P

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

This is a large structure.

Entity

Chain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
125S ribosomal RNApolymer33961097493.91
GenBank (CP011821.1)
Saccharomyces cerevisiae (Baker's yeast)25S rRNA
35S ribosomal RNApolymer12138951.11
GenBank (CP008434.1)
Saccharomyces cerevisiae (Baker's yeast)5S rRNA
45.8S ribosomal RNApolymer15850682.91
GenBank (KX131151.1)
Saccharomyces cerevisiae (Baker's yeast)5.8S rRNA
A60S ribosomal protein L2-Apolymer24626586.61
UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L5,RP8,YL6
B60S ribosomal protein L3polymer38743850.81
UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
C60S ribosomal protein L4-Apolymer36139027.91
UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L2,RP2,YL2
D60S ribosomal protein L5polymer29733764.81
UniProt (P26321)
Pfam (PF14204)
Pfam (PF17144)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L1,L1a,Ribosomal 5S RNA-binding protein,YL3
E60S ribosomal protein L6-Apolymer17620000.61
UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L17,RP18,YL16
F60S ribosomal protein L7-Apolymer24427686.31
UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L6,RP11,YL8
G60S ribosomal protein L8-Apolymer25628175.81
UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5
H60S ribosomal protein L9-Apolymer19121605.11
UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L8,RP24,YL11
J60S ribosomal protein L11-Apolymer17419755.71
UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L16,RP39,YL22
L60S ribosomal protein L13-Apolymer19922604.21
UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
M60S ribosomal protein L14-Apolymer13815195.11
UniProt (P36105)
Pfam (PF01929)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
N60S ribosomal protein L15-Apolymer20424482.41
UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L13,RP15R,YL10,YP18
O60S ribosomal protein L16-Apolymer19922247.21
UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L13a,L21,RP22,YL15
P60S ribosomal protein L17-Apolymer18420589.51
UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L20A,YL17
Q60S ribosomal protein L18-Apolymer18620609.31
UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP28
R60S ribosomal protein L19-Apolymer18921762.31
UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L23,RP15L,RP33,YL14
S60S ribosomal protein L20-Apolymer17220478.91
UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L18a
T60S ribosomal protein L21-Apolymer16018279.31
UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
U60S ribosomal protein L22-Apolymer12113711.41
UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L1c,RP4,YL31
V60S ribosomal protein L23-Apolymer13714494.01
UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L17a,YL32
W60S ribosomal protein L24-Apolymer15517661.71
UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L30,RP29,YL21
X60S ribosomal protein L25polymer14215787.61
UniProt (P04456)
Pfam (PF00276)
Pfam (PF03939)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP16L,YL25,YP42'
Y60S ribosomal protein L26-Apolymer12714265.81
UniProt (P05743)
Pfam (PF00467)
Pfam (PF16906)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L33,YL33
Z60S ribosomal protein L27-Apolymer13615568.41
UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
a60S ribosomal protein L28polymer14916761.71
UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L27a,L29,RP44,RP62,YL24
b60S ribosomal protein L29polymer596691.91
UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)YL43
c60S ribosomal protein L30polymer10511430.41
UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L32,RP73,YL38
d60S ribosomal protein L31-Apolymer11312980.21
UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L34,YL28
e60S ribosomal protein L32polymer13014809.41
UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
f60S ribosomal protein L33-Apolymer10712177.11
UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L37,RP47,YL37
g60S ribosomal protein L34-Apolymer12113673.21
UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
h60S ribosomal protein L35-Apolymer12013942.61
UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
i60S ribosomal protein L36-Apolymer10011151.31
UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L39,YL39
j60S ribosomal protein L37-Apolymer889877.41
UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L43,YL35,YP55
k60S ribosomal protein L38polymer788845.61
UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
l60S ribosomal protein L39polymer516358.61
UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L46,YL40
o60S ribosomal protein L42-Apolymer10612246.71
UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L41,YL27,YP44
p60S ribosomal protein L43-Apolymer9210113.01
UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)L37a,YL35
w60S ribosomal export protein NMD3polymer24827809.81
UniProt (P38861)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Nonsense-mediated mRNA decay protein 3
yEukaryotic translation initiation factor 6polymer22724470.41
UniProt (Q12522)
Pfam (PF01912)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)eIF-6
zCytoplasmic 60S subunit biogenesis factor REH1polymer566737.81
UniProt (Q06709)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)REI1-homolog 1,pre-60S factor REH1

Sequence viewer

Contents of the asymmetric unit

PolymersNumber of chains44
Total molecular weight1945395.3
Non-Polymers*Number of molecules0
Total molecular weight0.0
All*Total molecular weight1945395.3
*Water molecules are not included.