5FKP
Crystal structure of the mouse CD1d in complex with the p99 peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1 | polymer | 285 | 32609.6 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) | MUS MUSCULUS (HOUSE MOUSE) | CD1D.1 |
| 2 | B (B) | BETA 2 MICROGLOBULIN | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) | MUS MUSCULUS (HOUSE MOUSE) | |
| 3 | C (C) | P99 | polymer | 22 | 2873.2 | 1 | MUS MUSCULUS | ||
| 4 | D (D) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
| 5 | E, F (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 6 | G (A) | TETRACOSYL PALMITATE | non-polymer | 593.1 | 1 | Chemie (6UL) | |||
| 7 | H, I, J, K (A, B) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 8 | L (B) | D(-)-TARTARIC ACID | non-polymer | 150.1 | 1 | Chemie (TAR) | |||
| 9 | M, N, O (A, B, C) | water | water | 18.0 | 272 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
| PDB | External Database | Details |
|---|---|---|
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 47143.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 894.8 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1553.9 | |
| All* | Total formula weight | 49591.9 |
