5FI9
Closed form of murine Acid Sphingomyelinase in complex with bisphosphonate inhibitor AbPA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Sphingomyelin phosphodiesterase | polymer | 538 | 60431.6 | 2 | UniProt (Q04519) Pfam (PF00149) Pfam (PF19272) In PDB | Mus musculus (Mouse) | Acid sphingomyelinase,aSMase |
2 | C, E, G, J | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 4 | In PDB GlyTouCan (G42666HT) | |||
3 | D, I | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
4 | F | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
5 | H | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | In PDB GlyTouCan (G32152BH) | |||
6 | K | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G00395TQ) | |||
7 | A, B | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
8 | A, B | (1-azanyl-1-phosphono-decyl)phosphonic acid | non-polymer | 317.3 | 2 | Chemie (NT8) | |||
9 | water | water | 18.0 | 54 | Chemie (HOH) |
Sequence modifications
A, B: 84 - 611 (UniProt: Q04519)
PDB | External Database | Details |
---|---|---|
Asp 74 | - | expression tag |
Arg 75 | - | expression tag |
His 76 | - | expression tag |
His 77 | - | expression tag |
His 78 | - | expression tag |
His 79 | - | expression tag |
His 80 | - | expression tag |
His 81 | - | expression tag |
Lys 82 | - | expression tag |
Leu 83 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 120863.3 | |
Branched | Number of molecules | 9 |
Total formula weight | 5523.2 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 896.1 | |
All* | Total formula weight | 127282.6 |