5FCI
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 2, 6 | 18S ribosomal RNA | polymer | 1800 | 579761.9 | 2 | REF (831416132) | Saccharomyces cerevisiae S288c | Saccharomyces cerevisiae S288c RDN37-1 miscRNA |
2 | S0, s0 | 40S ribosomal protein S0-A | polymer | 251 | 27920.1 | 2 | UniProt (P32905) Pfam (PF00318) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | Nucleic acid-binding protein NAB1A |
3 | S1, s1 | 40S ribosomal protein S1-A | polymer | 254 | 28667.3 | 2 | UniProt (P33442) Pfam (PF01015) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP10A |
4 | S2, s2 | 40S ribosomal protein S2 | polymer | 253 | 27359.6 | 2 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | Omnipotent suppressor protein SUP44,RP12,S4,YS5 |
5 | S3, s3 | 40S ribosomal protein S3 | polymer | 239 | 26411.6 | 2 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP13,YS3 |
6 | S4, s4 | 40S ribosomal protein S4-A | polymer | 260 | 29338.1 | 2 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP5,S7,YS6 |
7 | S5, s5 | 40S ribosomal protein S5 | polymer | 224 | 24941.4 | 2 | UniProt (P26783) Pfam (PF00177) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP14,S2,YS8 |
8 | S6, s6 | 40S ribosomal protein S6-A | polymer | 236 | 27054.5 | 2 | UniProt (P0CX37) Pfam (PF01092) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP9,S10,YS4 |
9 | S7, s7 | 40S ribosomal protein S7-A | polymer | 189 | 21527.0 | 2 | UniProt (P26786) Pfam (PF01251) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP30,RP40 |
10 | S8, s8 | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 2 | UniProt (P0CX39) Pfam (PF01201) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP19,S14,YS9 |
11 | S9, s9 | 40S ribosomal protein S9-A | polymer | 196 | 22356.7 | 2 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP21,S13,YP28,YS11 |
12 | C0 | 40S ribosomal protein S10-A | polymer | 105 | 12785.5 | 1 | UniProt (Q08745) Pfam (PF03501) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
13 | C1, c1 | 40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17) | polymer | 155 | 17354.4 | 2 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP41,S18,YS12 |
14 | C2, c2 | 40S ribosomal protein S12 | polymer | 142 | 14962.1 | 2 | UniProt (P48589) Pfam (PF01248) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
15 | C3, c3 | 40S ribosomal protein S13 | polymer | 150 | 16928.7 | 2 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | S27a,YS15 |
16 | C4, c4 | 40S ribosomal protein S14-A | polymer | 136 | 14431.5 | 2 | UniProt (P06367) Pfam (PF00411) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP59A |
17 | C5, c5 | 40S ribosomal protein S15 | polymer | 141 | 15900.7 | 2 | UniProt (Q01855) Pfam (PF00203) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RIG protein,RP52,S21,YS21 |
18 | C6, c6 | 40S ribosomal protein S16-A | polymer | 142 | 15746.3 | 2 | UniProt (P0CX51) Pfam (PF00380) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP61R |
19 | C7, c7 | 40S ribosomal protein S17-A | polymer | 136 | 15820.4 | 2 | UniProt (P02407) Pfam (PF00833) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP51A |
20 | C8, c8 | 40S ribosomal protein S18-A | polymer | 145 | 16940.4 | 2 | UniProt (P0CX55) Pfam (PF00416) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
21 | C9, c9 | 40S ribosomal protein S19-A | polymer | 143 | 15810.9 | 2 | UniProt (P07280) Pfam (PF01090) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP55A,S16a,YP45,YS16A |
22 | D0, d0 | 40S ribosomal protein S20 | polymer | 120 | 13797.9 | 2 | UniProt (P38701) Pfam (PF00338) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
23 | D1, d1 | 40S ribosomal protein S21-A | polymer | 87 | 9758.8 | 2 | UniProt (P0C0V8) Pfam (PF01249) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | S26,YS25 |
24 | D2, d2 | 40S ribosomal protein S22-A | polymer | 129 | 14518.9 | 2 | UniProt (P0C0W1) Pfam (PF00410) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP50,S24,YP58,YS22 |
25 | D3, d3 | 40S ribosomal protein S23-A | polymer | 144 | 15942.7 | 2 | UniProt (P0CX29) Pfam (PF00164) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP37,S28,YS14 |
26 | D4, d4 | 40S ribosomal protein S24-A | polymer | 134 | 15231.6 | 2 | UniProt (P0CX31) Pfam (PF01282) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP50 |
27 | D5, d5 | 40S ribosomal protein S25-A | polymer | 107 | 11936.1 | 2 | UniProt (Q3E792) Pfam (PF03297) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP45,S31,YS23 |
28 | D6, d6 | 40S ribosomal protein S26-A | polymer | 97 | 11023.0 | 2 | UniProt (P39938) UniProt (by SIFTS) (P39939) Pfam (PF01283) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
29 | D7, d7 | 40S ribosomal protein S27-A | polymer | 81 | 8762.2 | 2 | UniProt (P35997) Pfam (PF01667) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP61,YS20 |
30 | D8, d8 | 40S ribosomal protein S28-A | polymer | 66 | 7474.7 | 2 | UniProt (Q3E7X9) Pfam (PF01200) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | S33,YS27 |
31 | D9, d9 | 40S ribosomal protein S29-A | polymer | 55 | 6544.5 | 2 | UniProt (P41057) Pfam (PF00253) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | S36,YS29 |
32 | E0, e0 | 40S ribosomal protein S30-A | polymer | 62 | 7006.3 | 2 | UniProt (P0CX33) Pfam (PF04758) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
33 | E1, e1 | 40S ribosomal protein S31 | polymer | 76 | 8703.5 | 2 | UniProt (P05759) Pfam (PF01599) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
34 | SR, sR | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 318 | 34710.0 | 2 | UniProt (P38011) Pfam (PF00400) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1 |
35 | SM, sM | Suppressor protein STM1,Suppressor protein STM1 | polymer | 182 | 18715.9 | 2 | UniProt (P39015) Pfam (PF09598) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | 3BP1,GU4 nucleic-binding protein 2,G4p2 protein,POP2 multicopy suppressor protein 4,Ribosomal subunits association factor,AF,TOM1 suppressor protein 1,Triplex-binding protein 1 |
36 | 1, 5 | 25S ribosomal RNA | polymer | 3396 | 1097493.9 | 2 | REF (831416132) | Saccharomyces cerevisiae S288c | Saccharomyces cerevisiae S288c RDN37-1 miscRNA |
37 | 3, 7 | 5S ribosomal RNA | polymer | 121 | 38951.1 | 2 | GenBank (834774822) | Saccharomyces cerevisiae S288c | |
38 | 4, 8 | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 2 | GenBank (940534893) | Saccharomyces cerevisiae S288c | |
39 | L2, l2 | 60S ribosomal protein L2-A | polymer | 253 | 27332.4 | 2 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L5,RP8,YL6 |
40 | L3, l3 | 60S ribosomal protein L3 | polymer | 386 | 43636.5 | 2 | UniProt (P14126) Pfam (PF00297) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
41 | L4, l4 | 60S ribosomal protein L4-A | polymer | 361 | 39027.9 | 2 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L2,RP2,YL2 |
42 | L5, l5 | 60S ribosomal protein L5 | polymer | 296 | 33633.6 | 2 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L1,L1a,Ribosomal 5S RNA-binding protein,YL3 |
43 | L6, l6 | 60S ribosomal protein L6-A | polymer | 175 | 19869.4 | 2 | UniProt (Q02326) Pfam (PF01159) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L17,RP18,YL16 |
44 | L7, l7 | 60S ribosomal protein L7-A | polymer | 243 | 27555.1 | 2 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L6,RP11,YL8 |
45 | L8, l8 | 60S ribosomal protein L8-A | polymer | 255 | 28044.6 | 2 | UniProt (P17076) Pfam (PF01248) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L4,L4-2,L7a-1,Maintenance of killer protein 7,RP6,YL5 |
46 | L9, l9 | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 2 | UniProt (P05738) Pfam (PF00347) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L8,RP24,YL11 |
47 | M0, m0 | 60S ribosomal protein L10 | polymer | 220 | 25279.3 | 2 | UniProt (P41805) Pfam (PF00252) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
48 | M1, m1 | 60S ribosomal protein L11-A | polymer | 173 | 19624.5 | 2 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L16,RP39,YL22 |
49 | M3, m3 | 60S ribosomal protein L13-A | polymer | 198 | 22473.0 | 2 | UniProt (Q12690) Pfam (PF01294) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
50 | M4, m4 | 60S ribosomal protein L14-A | polymer | 137 | 15063.9 | 2 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
51 | M5, m5 | 60S ribosomal protein L15-A | polymer | 203 | 24351.2 | 2 | UniProt (P05748) Pfam (PF00827) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L13,RP15R,YL10,YP18 |
52 | M6, m6 | 60S ribosomal protein L16-A | polymer | 198 | 22116.0 | 2 | UniProt (P26784) Pfam (PF00572) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L13a,L21,RP22,YL15 |
53 | M7, m7 | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 2 | UniProt (P05740) Pfam (PF00237) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L20A,YL17 |
54 | M8, m8 | 60S ribosomal protein L18-A | polymer | 185 | 20478.1 | 2 | UniProt (P0CX49) Pfam (PF17135) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP28 |
55 | M9, m9 | 60S ribosomal protein L19-A | polymer | 188 | 21631.1 | 2 | UniProt (P0CX82) Pfam (PF01280) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L23,RP15L,RP33,YL14 |
56 | N0, n0 | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 2 | UniProt (P0CX23) Pfam (PF01775) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L18a |
57 | N1, n1 | 60S ribosomal protein L21-A | polymer | 159 | 18148.1 | 2 | UniProt (Q02753) Pfam (PF01157) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
58 | N2, n2 | 60S ribosomal protein L22-A | polymer | 120 | 13580.2 | 2 | UniProt (P05749) Pfam (PF01776) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L1c,RP4,YL31 |
59 | N3, n3 | 60S ribosomal protein L23-A | polymer | 136 | 14362.8 | 2 | UniProt (P0CX41) Pfam (PF00238) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L17a,YL32 |
60 | N4, n4 | 60S ribosomal protein L24-A | polymer | 155 | 17661.7 | 2 | UniProt (P04449) Pfam (PF01246) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L30,RP29,YL21 |
61 | N5, n5 | 60S ribosomal protein L25 | polymer | 141 | 15656.4 | 2 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | RP16L,YL25,YP42' |
62 | N6, n6 | 60S ribosomal protein L26-A | polymer | 126 | 14134.6 | 2 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L33,YL33 |
63 | N7, n7 | 60S ribosomal protein L27-A | polymer | 135 | 15437.2 | 2 | UniProt (P0C2H6) Pfam (PF01777) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
64 | N8, n8 | 60S ribosomal protein L28 | polymer | 148 | 16630.5 | 2 | UniProt (P02406) Pfam (PF00828) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L27a,L29,RP44,RP62,YL24 |
65 | N9, n9 | 60S ribosomal protein L29 | polymer | 58 | 6560.7 | 2 | UniProt (P05747) Pfam (PF01779) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | YL43 |
66 | O0, o0 | 60S ribosomal protein L30 | polymer | 104 | 11299.2 | 2 | UniProt (P14120) Pfam (PF01248) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L32,RP73,YL38 |
67 | O1, o1 | 60S ribosomal protein L31-A | polymer | 112 | 12849.0 | 2 | UniProt (P0C2H8) Pfam (PF01198) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L34,YL28 |
68 | O2, o2 | 60S ribosomal protein L32 | polymer | 129 | 14678.2 | 2 | UniProt (P38061) Pfam (PF01655) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
69 | O3, o3 | 60S ribosomal protein L33-A | polymer | 106 | 12045.9 | 2 | UniProt (P05744) Pfam (PF01247) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L37,RP47,YL37 |
70 | O4, o4 | 60S ribosomal protein L34-A | polymer | 120 | 13542.0 | 2 | UniProt (P87262) Pfam (PF01199) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
71 | O5, o5 | 60S ribosomal protein L35-A | polymer | 119 | 13811.4 | 2 | UniProt (P0CX84) Pfam (PF00831) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
72 | O6, o6 | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 2 | UniProt (P05745) Pfam (PF01158) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L39,YL39 |
73 | O7, o7 | 60S ribosomal protein L37-A | polymer | 87 | 9746.2 | 2 | UniProt (P49166) Pfam (PF01907) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L43,YL35,YP55 |
74 | O8, o8 | 60S ribosomal protein L38 | polymer | 77 | 8714.4 | 2 | UniProt (P49167) Pfam (PF01781) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
75 | O9, o9 | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 2 | UniProt (P04650) Pfam (PF00832) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L46,YL40 |
76 | Q0, q0 | Ubiquitin-60S ribosomal protein L40 | polymer | 52 | 6032.3 | 2 | UniProt (P0CH08) Pfam (PF01020) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
77 | Q1, q1 | 60S ribosomal protein L41-A | polymer | 25 | 3354.2 | 2 | UniProt (P0CX86) Pfam (PF05162) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L47,YL41 |
78 | Q2, q2 | 60S ribosomal protein L42-A | polymer | 105 | 12115.5 | 2 | UniProt (P0CX27) Pfam (PF00935) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L41,YL27,YP44 |
79 | Q3, q3 | 60S ribosomal protein L43-A | polymer | 91 | 9981.8 | 2 | UniProt (P0CX25) Pfam (PF01780) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | L37a,YL35 |
80 | c0 | 40S ribosomal protein S10-A | polymer | 96 | 11181.8 | 1 | UniProt (Q08745) Pfam (PF03501) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | |
81 | m2 | 60S ribosomal protein L12-A (uL11) | polymer | 150 | 12783.8 | 1 | Saccharomyces cerevisiae S288c | ||
82 | p0 | 60S acidic ribosomal protein P0 | polymer | 311 | 33158.7 | 1 | UniProt (P05317) Pfam (PF17777) Pfam (PF00428) Pfam (PF00466) In PDB | Saccharomyces cerevisiae S288c (Baker's yeast) | A0,L10E |
83 | p1 | 60S ribosomal protein P1 alpha | polymer | 47 | 4017.9 | 1 | Saccharomyces cerevisiae S288c | ||
84 | p2 | 60S ribosomal protein P2 beta | polymer | 46 | 3932.8 | 1 | Saccharomyces cerevisiae S288c | ||
85 | 1, 6, 2, c5, 5... | osmium (III) hexammine | non-polymer | 286.4 | 1089 | Chemie (OHX) | |||
86 | 5, 6, 1, 2, 7... | MAGNESIUM ION | non-polymer | 24.3 | 1198 | Chemie (MG) | |||
87 | D6, D7, D9, d6, O7... | ZINC ION | non-polymer | 65.4 | 16 | Chemie (ZN) |
Sequence modifications
C1, c1: 2 - 147 (UniProt: P0CX47)
C1, c1: 148 - 156 (PDB: 5FCI)
SM, sM: 1 - 141 (UniProt: P39015)
SM, sM: 151 - 191 (PDB: 5FCI)
L3, l3: 2 - 387 (UniProt: P14126)
c0: 1 - 84 (UniProt: Q08745)
C1, c1: 148 - 156 (PDB: 5FCI)
SM, sM: 1 - 141 (UniProt: P39015)
SM, sM: 151 - 191 (PDB: 5FCI)
L3, l3: 2 - 387 (UniProt: P14126)
PDB | External Database | Details |
---|---|---|
Cys 255 | Trp 255 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Unk 87 | - | expression tag |
Unk 88 | - | expression tag |
Unk 89 | - | expression tag |
Unk 90 | - | expression tag |
Unk 91 | - | expression tag |
Unk 92 | - | expression tag |
Unk 93 | - | expression tag |
Unk 94 | - | expression tag |
Unk 95 | - | expression tag |
Unk 96 | - | expression tag |
Unk 97 | - | expression tag |
Unk 98 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 162 |
Total formula weight | 6244408.4 | |
Non-Polymers* | Number of molecules | 2303 |
Total formula weight | 342015.4 | |
All* | Total formula weight | 6586423.9 |