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5FBD

S1 nuclease from Aspergillus oryzae in complex with phosphate and 2'-deoxycytidine

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Nuclease S1polymer26729083.71UniProt (P24021)
Pfam (PF02265)
Aspergillus oryzae RIB40 (Yellow koji mold)Deoxyribonuclease S1,Endonuclease S1,Single-stranded-nucleate endonuclease
2B, C, D
(A)
ZINC IONnon-polymer65.43Chemie (ZN)
3E
(A)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
4F
(A)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
5G
(A)
2'-DEOXYCYTIDINEnon-polymer227.21Chemie (DCZ)
6H
(A)
waterwater18.0377Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight29083.7
Non-Polymers*Number of molecules6
Total formula weight739.6
All*Total formula weight29823.3
*Water molecules are not included.

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PDB entries from 2025-06-18

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