5F84
Crystal structure of Drosophila Poglut1 (Rumi) complexed with its glycoprotein product (glucosylated EGF repeat) and UDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | O-glucosyltransferase rumi | polymer | 402 | 46820.2 | 1 | UniProt (Q8T045) Pfam (PF05686) | Drosophila melanogaster (Fruit fly) | |
| 2 | B (B) | Coagulation factor IX | polymer | 50 | 5710.2 | 1 | UniProt (P00740) Pfam (PF00008) | Homo sapiens (Human) | Christmas factor,Plasma thromboplastin component,PTC |
| 3 | C (A) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 1 | Chemie (UDP) PubChem (1158) PubChem (6031) PubChem (25323044) PubChem (25323048) PubChem (44298965) PubChem (53486216) PubChem (3084486) PubChem (60098857) PubChem (57448939) PubChem (6101632) PubChem (6604175) PubChem (91746160) PubChem (92332560) PubChem (92332561) PubChem (92332562) PubChem (92332563) PubChem (11811538) PubChem (93088131) PubChem (93630083) PubChem (12049241) | |||
| 4 | D, E, F, G, H (A) | SULFATE ION | non-polymer | 96.1 | 5 | Chemie (SO4) | |||
| 5 | I (B) | beta-D-glucopyranose | non-polymer | 180.2 | 1 | Chemie (BGC) | |||
| 6 | J, K (A, B) | water | water | 18.0 | 95 | Chemie (HOH) |
Sequence modifications
A: 21 - 407 (UniProt: Q8T045)
B: 46 - 84 (UniProt: P00740)
| PDB | External Database | Details |
|---|---|---|
| Ala 13 | - | expression tag |
| Ala 14 | - | expression tag |
| Gln 15 | - | expression tag |
| Pro 16 | - | expression tag |
| Ala 17 | - | expression tag |
| Glu 18 | - | expression tag |
| Ala 19 | - | expression tag |
| Leu 20 | - | expression tag |
| Ala 408 | - | expression tag |
| Arg 409 | - | expression tag |
| Ala 410 | - | expression tag |
| Leu 411 | - | expression tag |
| Val 412 | - | expression tag |
| Pro 413 | - | expression tag |
| Arg 414 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 43 | - | initiating methionine |
| Asp 44 | - | expression tag |
| Ile 45 | - | expression tag |
| Leu 85 | - | expression tag |
| Glu 86 | - | expression tag |
| His 87 | - | expression tag |
| His 88 | - | expression tag |
| His 89 | - | expression tag |
| His 90 | - | expression tag |
| His 91 | - | expression tag |
| His 92 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 52530.4 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1064.6 | |
| All* | Total formula weight | 53595.0 |
