5F1Q
Crystal Structure of Periplasmic Dipeptide Transport Protein from Yersinia pestis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Periplasmic dipeptide transport protein | polymer | 543 | 62117.7 | 2 | UniProt (A0A0H2YM47) Pfam (PF00496) | Yersinia pestis | |
| 2 | C, E, G, I, L... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
| 3 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 4 | F (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 5 | H, O (A, B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 6 | J, K, R, S (A, B) | GLUTAMINE | non-polymer | 146.1 | 4 | Chemie (GLN) | |||
| 7 | X, Y (A, B) | water | water | 18.0 | 482 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 535 (UniProt: A0A0H2YM47)
| PDB | External Database | Details |
|---|---|---|
| Ala 536 | - | expression tag |
| Gly 537 | - | expression tag |
| Glu 538 | - | expression tag |
| Asn 539 | - | expression tag |
| Leu 540 | - | expression tag |
| Tyr 541 | - | expression tag |
| Phe 542 | - | expression tag |
| Gln 543 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 124235.3 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 1660.6 | |
| All* | Total formula weight | 125895.9 |
