5F1Q
Crystal Structure of Periplasmic Dipeptide Transport Protein from Yersinia pestis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0015833 | biological_process | peptide transport |
| A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| A | 0035442 | biological_process | dipeptide transmembrane transport |
| A | 0042938 | biological_process | dipeptide transport |
| A | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| A | 0055085 | biological_process | transmembrane transport |
| A | 0071916 | molecular_function | dipeptide transmembrane transporter activity |
| A | 1904680 | molecular_function | peptide transmembrane transporter activity |
| B | 0015833 | biological_process | peptide transport |
| B | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| B | 0035442 | biological_process | dipeptide transmembrane transport |
| B | 0042938 | biological_process | dipeptide transport |
| B | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
| B | 0055085 | biological_process | transmembrane transport |
| B | 0071916 | molecular_function | dipeptide transmembrane transporter activity |
| B | 1904680 | molecular_function | peptide transmembrane transporter activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue EDO A 601 |
| Chain | Residue |
| A | LYS465 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 602 |
| Chain | Residue |
| A | ASP150 |
| A | ASP451 |
| A | GLN472 |
| A | HOH759 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue PEG A 604 |
| Chain | Residue |
| A | LYS419 |
| A | ASP423 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 605 |
| Chain | Residue |
| A | ASP351 |
| A | TYR352 |
| A | ARG241 |
| A | LYS350 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue CL A 606 |
| Chain | Residue |
| A | LYS335 |
| A | ASN336 |
| A | TYR345 |
| A | HIS505 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue EDO A 607 |
| Chain | Residue |
| A | PRO340 |
| A | MSE342 |
| site_id | AC7 |
| Number of Residues | 10 |
| Details | binding site for residue GLN A 608 |
| Chain | Residue |
| A | THR48 |
| A | GLY50 |
| A | TYR142 |
| A | TRP433 |
| A | THR434 |
| A | ASP436 |
| A | LEU524 |
| A | GLY525 |
| A | GLN609 |
| A | HOH841 |
| site_id | AC8 |
| Number of Residues | 13 |
| Details | binding site for residue GLN A 609 |
| Chain | Residue |
| A | THR48 |
| A | SER49 |
| A | GLY50 |
| A | GLU141 |
| A | ARG383 |
| A | TYR385 |
| A | TRP414 |
| A | LEU418 |
| A | MSE431 |
| A | TRP433 |
| A | SER457 |
| A | TYR459 |
| A | GLN608 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue EDO A 610 |
| Chain | Residue |
| A | GLU40 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue EDO B 601 |
| Chain | Residue |
| B | THR411 |
| B | GLU413 |
| site_id | AD2 |
| Number of Residues | 3 |
| Details | binding site for residue EDO B 602 |
| Chain | Residue |
| B | ASP320 |
| B | ASP481 |
| B | HOH701 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue CL B 603 |
| Chain | Residue |
| B | ALA334 |
| B | LYS335 |
| B | ASN336 |
| B | TYR345 |
| B | HIS505 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue EDO B 604 |
| Chain | Residue |
| B | LYS350 |
| B | ASN495 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 605 |
| Chain | Residue |
| B | MSE285 |
| B | GLN287 |
| B | VAL520 |
| B | VAL521 |
| B | HOH881 |
| site_id | AD6 |
| Number of Residues | 10 |
| Details | binding site for residue GLN B 606 |
| Chain | Residue |
| B | THR48 |
| B | GLY50 |
| B | TYR142 |
| B | TRP433 |
| B | THR434 |
| B | ASP436 |
| B | LEU524 |
| B | GLY525 |
| B | GLN607 |
| B | HOH796 |
| site_id | AD7 |
| Number of Residues | 10 |
| Details | binding site for residue GLN B 607 |
| Chain | Residue |
| B | THR48 |
| B | SER49 |
| B | GLY50 |
| B | ARG383 |
| B | TYR385 |
| B | TRP414 |
| B | MSE431 |
| B | GLY432 |
| B | TYR459 |
| B | GLN606 |
| site_id | AD8 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 608 |
| Chain | Residue |
| B | GLY37 |
| B | SER38 |
| B | VAL381 |
| B | HOH704 |
| B | HOH870 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 609 |
| Chain | Residue |
| B | PRO340 |
| B | PRO340 |
| B | MSE342 |
| B | HOH707 |
| B | HOH707 |
| site_id | AE1 |
| Number of Residues | 2 |
| Details | binding site for residue EDO B 610 |
| Chain | Residue |
| B | PRO288 |
| B | HOH732 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue EDO B 611 |
| Chain | Residue |
| B | GLN287 |
| B | PRO288 |
| B | HOH703 |
Functional Information from PROSITE/UniProt
| site_id | PS01040 |
| Number of Residues | 23 |
| Details | SBP_BACTERIAL_5 Bacterial extracellular solute-binding proteins, family 5 signature. AerwevseDgkTYtFyLRKGVKW |
| Chain | Residue | Details |
| A | ALA79-TRP101 |
