5EJ8
EcMenD-ThDP-Mn2+ complex structure soaked with 2-ketoglutarate for 2 min
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase | polymer | 556 | 61433.8 | 8 | UniProt (P17109) Pfam (PF02776) Pfam (PF16582) Pfam (PF02775) In PDB | Escherichia coli K12 | ThDP-dependent emzyme MenD,SEPHCHC synthase,Menaquinone biosynthesis protein MenD |
| 2 | B, F, H, D, A... | (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid | non-polymer | 527.4 | 8 | Chemie (TD6) | |||
| 3 | B, F, H, D, A... | MANGANESE (II) ION | non-polymer | 54.9 | 8 | Chemie (MN) | |||
| 4 | B, F, H, D, A... | MAGNESIUM ION | non-polymer | 24.3 | 15 | Chemie (MG) | |||
| 5 | B, F, H, D, A... | GLYCEROL | non-polymer | 92.1 | 14 | Chemie (GOL) | |||
| 6 | G, C, E, F, H... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 21 | Chemie (EDO) | |||
| 7 | B, C, E, G, F... | FORMIC ACID | non-polymer | 46.0 | 45 | Chemie (FMT) | |||
| 8 | C | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 9 | water | water | 18.0 | 5676 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 491470.2 | |
| Non-Polymers* | Number of molecules | 112 |
| Total formula weight | 9809.3 | |
| All* | Total formula weight | 501279.6 |
