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5EJ7

EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 21 s

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E...2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthasepolymer55661433.88UniProt (P17109)
Pfam (PF02776)
Pfam (PF16582)
Pfam (PF02775)
In PDB
Escherichia coli K12ThDP-dependent enzyme MenD,SEPHCHC synthase,Menaquinone biosynthesis protein MenD
2F, G, A, H, B...(4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acidnon-polymer527.48Chemie (TD6)
3F, G, A, H, B...MANGANESE (II) IONnon-polymer54.99Chemie (MN)
4E, F, G, A, H...GLYCEROLnon-polymer92.114Chemie (GOL)
5waterwater18.06111Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight491470.2
Non-Polymers*Number of molecules31
Total formula weight6003.0
All*Total formula weight497473.2
*Water molecules are not included.

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PDB entries from 2024-07-31

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