5EJ7
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 21 s
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0009234 | biological_process | menaquinone biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0030145 | molecular_function | manganese ion binding |
| A | 0030976 | molecular_function | thiamine pyrophosphate binding |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0044281 | biological_process | small molecule metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0009234 | biological_process | menaquinone biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0030145 | molecular_function | manganese ion binding |
| B | 0030976 | molecular_function | thiamine pyrophosphate binding |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0044281 | biological_process | small molecule metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0009234 | biological_process | menaquinone biosynthetic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0030145 | molecular_function | manganese ion binding |
| C | 0030976 | molecular_function | thiamine pyrophosphate binding |
| C | 0042803 | molecular_function | protein homodimerization activity |
| C | 0044281 | biological_process | small molecule metabolic process |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0009234 | biological_process | menaquinone biosynthetic process |
| D | 0016740 | molecular_function | transferase activity |
| D | 0030145 | molecular_function | manganese ion binding |
| D | 0030976 | molecular_function | thiamine pyrophosphate binding |
| D | 0042803 | molecular_function | protein homodimerization activity |
| D | 0044281 | biological_process | small molecule metabolic process |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0003824 | molecular_function | catalytic activity |
| E | 0009234 | biological_process | menaquinone biosynthetic process |
| E | 0016740 | molecular_function | transferase activity |
| E | 0030145 | molecular_function | manganese ion binding |
| E | 0030976 | molecular_function | thiamine pyrophosphate binding |
| E | 0042803 | molecular_function | protein homodimerization activity |
| E | 0044281 | biological_process | small molecule metabolic process |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0003824 | molecular_function | catalytic activity |
| F | 0009234 | biological_process | menaquinone biosynthetic process |
| F | 0016740 | molecular_function | transferase activity |
| F | 0030145 | molecular_function | manganese ion binding |
| F | 0030976 | molecular_function | thiamine pyrophosphate binding |
| F | 0042803 | molecular_function | protein homodimerization activity |
| F | 0044281 | biological_process | small molecule metabolic process |
| F | 0046872 | molecular_function | metal ion binding |
| F | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0003824 | molecular_function | catalytic activity |
| G | 0009234 | biological_process | menaquinone biosynthetic process |
| G | 0016740 | molecular_function | transferase activity |
| G | 0030145 | molecular_function | manganese ion binding |
| G | 0030976 | molecular_function | thiamine pyrophosphate binding |
| G | 0042803 | molecular_function | protein homodimerization activity |
| G | 0044281 | biological_process | small molecule metabolic process |
| G | 0046872 | molecular_function | metal ion binding |
| G | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
| H | 0000287 | molecular_function | magnesium ion binding |
| H | 0003824 | molecular_function | catalytic activity |
| H | 0009234 | biological_process | menaquinone biosynthetic process |
| H | 0016740 | molecular_function | transferase activity |
| H | 0030145 | molecular_function | manganese ion binding |
| H | 0030976 | molecular_function | thiamine pyrophosphate binding |
| H | 0042803 | molecular_function | protein homodimerization activity |
| H | 0044281 | biological_process | small molecule metabolic process |
| H | 0046872 | molecular_function | metal ion binding |
| H | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 29 |
| Details | binding site for residue TD6 A 601 |
| Chain | Residue |
| A | ASN390 |
| A | GLY441 |
| A | ASP442 |
| A | LEU443 |
| A | SER444 |
| A | TYR447 |
| A | ASN469 |
| A | GLY471 |
| A | GLY472 |
| A | GLN473 |
| A | ILE474 |
| A | SER391 |
| A | MN602 |
| A | HOH803 |
| A | HOH820 |
| A | HOH945 |
| B | PRO30 |
| B | GLU55 |
| B | THR81 |
| B | ALA82 |
| B | ASN117 |
| B | GLN118 |
| A | LEU392 |
| A | ARG395 |
| A | ARG413 |
| A | SER416 |
| A | GLY417 |
| A | ILE418 |
| A | ASP419 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MN A 602 |
| Chain | Residue |
| A | ASP442 |
| A | ASN469 |
| A | GLY471 |
| A | TD6601 |
| A | HOH803 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 603 |
| Chain | Residue |
| A | HIS49 |
| A | HIS50 |
| A | THR51 |
| A | ARG430 |
| A | LEU454 |
| A | GLN457 |
| A | HOH744 |
| A | HOH763 |
| A | HOH1056 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 604 |
| Chain | Residue |
| A | ARG364 |
| A | HIS374 |
| A | ASP378 |
| A | HOH1115 |
| site_id | AC5 |
| Number of Residues | 28 |
| Details | binding site for residue TD6 B 601 |
| Chain | Residue |
| A | PRO30 |
| A | GLU55 |
| A | THR81 |
| A | ALA82 |
| A | ASN117 |
| A | GLN118 |
| B | ASN390 |
| B | SER391 |
| B | LEU392 |
| B | ARG395 |
| B | ARG413 |
| B | SER416 |
| B | GLY417 |
| B | ILE418 |
| B | ASP419 |
| B | GLY441 |
| B | ASP442 |
| B | LEU443 |
| B | SER444 |
| B | ASN469 |
| B | GLY471 |
| B | GLY472 |
| B | GLN473 |
| B | ILE474 |
| B | MN602 |
| B | HOH884 |
| B | HOH887 |
| B | HOH890 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue MN B 602 |
| Chain | Residue |
| B | ASP442 |
| B | ASN469 |
| B | GLY471 |
| B | TD6601 |
| B | HOH887 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 603 |
| Chain | Residue |
| B | HIS49 |
| B | HIS50 |
| B | THR51 |
| B | ARG430 |
| B | LEU454 |
| B | HOH728 |
| B | HOH732 |
| B | HOH956 |
| site_id | AC8 |
| Number of Residues | 30 |
| Details | binding site for residue TD6 C 601 |
| Chain | Residue |
| C | LEU443 |
| C | SER444 |
| C | TYR447 |
| C | ASN469 |
| C | GLY471 |
| C | GLY472 |
| C | GLN473 |
| C | ILE474 |
| C | MN602 |
| C | HOH6128 |
| C | HOH6206 |
| C | HOH6263 |
| C | HOH6304 |
| D | PRO30 |
| D | GLU55 |
| D | THR81 |
| D | ALA82 |
| D | ASN117 |
| D | GLN118 |
| C | ASN390 |
| C | SER391 |
| C | LEU392 |
| C | ARG395 |
| C | ARG413 |
| C | SER416 |
| C | GLY417 |
| C | ILE418 |
| C | ASP419 |
| C | GLY441 |
| C | ASP442 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue MN C 602 |
| Chain | Residue |
| C | ASP442 |
| C | ASN469 |
| C | GLY471 |
| C | TD6601 |
| C | HOH6206 |
| site_id | AD1 |
| Number of Residues | 8 |
| Details | binding site for residue GOL C 603 |
| Chain | Residue |
| C | HIS49 |
| C | HIS50 |
| C | THR51 |
| C | ARG430 |
| C | LEU454 |
| C | HOH6116 |
| C | HOH6135 |
| C | HOH6496 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 604 |
| Chain | Residue |
| B | HOH1406 |
| C | ARG364 |
| C | HIS374 |
| C | ASP378 |
| C | HOH6376 |
| site_id | AD3 |
| Number of Residues | 30 |
| Details | binding site for residue TD6 D 601 |
| Chain | Residue |
| C | PRO30 |
| C | GLU55 |
| C | THR81 |
| C | ALA82 |
| C | ASN117 |
| C | GLN118 |
| C | HOH6356 |
| D | ASN390 |
| D | SER391 |
| D | LEU392 |
| D | ARG395 |
| D | ARG413 |
| D | SER416 |
| D | GLY417 |
| D | ILE418 |
| D | ASP419 |
| D | GLY441 |
| D | ASP442 |
| D | LEU443 |
| D | SER444 |
| D | TYR447 |
| D | ASN469 |
| D | GLY471 |
| D | GLY472 |
| D | GLN473 |
| D | ILE474 |
| D | MN602 |
| D | HOH792 |
| D | HOH860 |
| D | HOH864 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue MN D 602 |
| Chain | Residue |
| D | ASP442 |
| D | ASN469 |
| D | GLY471 |
| D | TD6601 |
| D | HOH864 |
| site_id | AD5 |
| Number of Residues | 7 |
| Details | binding site for residue GOL D 603 |
| Chain | Residue |
| D | HIS50 |
| D | THR51 |
| D | ARG430 |
| D | LEU454 |
| D | HOH724 |
| D | HOH760 |
| D | HOH1022 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue GOL D 604 |
| Chain | Residue |
| D | ARG364 |
| D | HIS374 |
| D | ASP378 |
| D | HOH803 |
| site_id | AD7 |
| Number of Residues | 29 |
| Details | binding site for residue TD6 E 601 |
| Chain | Residue |
| E | ASN390 |
| E | SER391 |
| E | LEU392 |
| E | ARG395 |
| E | ARG413 |
| E | SER416 |
| E | GLY417 |
| E | ILE418 |
| E | ASP419 |
| E | GLY441 |
| E | ASP442 |
| E | LEU443 |
| E | SER444 |
| E | TYR447 |
| E | ASN469 |
| E | GLY471 |
| E | GLY472 |
| E | GLN473 |
| E | ILE474 |
| E | MN602 |
| E | HOH787 |
| E | HOH843 |
| E | HOH906 |
| F | PRO30 |
| F | GLU55 |
| F | THR81 |
| F | ALA82 |
| F | ASN117 |
| F | GLN118 |
| site_id | AD8 |
| Number of Residues | 5 |
| Details | binding site for residue MN E 602 |
| Chain | Residue |
| E | ASP442 |
| E | ASN469 |
| E | GLY471 |
| E | TD6601 |
| E | HOH843 |
| site_id | AD9 |
| Number of Residues | 9 |
| Details | binding site for residue GOL E 603 |
| Chain | Residue |
| E | HIS49 |
| E | HIS50 |
| E | THR51 |
| E | ARG430 |
| E | LEU454 |
| E | GLN457 |
| E | HOH728 |
| E | HOH784 |
| E | HOH934 |
| site_id | AE1 |
| Number of Residues | 4 |
| Details | binding site for residue GOL E 604 |
| Chain | Residue |
| E | ARG364 |
| E | HIS374 |
| E | ARG375 |
| E | ASP378 |
| site_id | AE2 |
| Number of Residues | 29 |
| Details | binding site for residue TD6 F 601 |
| Chain | Residue |
| E | PRO30 |
| E | GLU55 |
| E | THR81 |
| E | ALA82 |
| E | ASN117 |
| E | GLN118 |
| F | ASN390 |
| F | SER391 |
| F | LEU392 |
| F | ARG395 |
| F | ARG413 |
| F | SER416 |
| F | GLY417 |
| F | ILE418 |
| F | ASP419 |
| F | GLY441 |
| F | ASP442 |
| F | LEU443 |
| F | SER444 |
| F | TYR447 |
| F | ASN469 |
| F | GLY471 |
| F | GLY472 |
| F | GLN473 |
| F | ILE474 |
| F | MN602 |
| F | HOH744 |
| F | HOH830 |
| F | HOH963 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue MN F 602 |
| Chain | Residue |
| F | ASP442 |
| F | ASN469 |
| F | GLY471 |
| F | TD6601 |
| F | HOH744 |
| site_id | AE4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL F 603 |
| Chain | Residue |
| F | HIS50 |
| F | THR51 |
| F | ARG430 |
| F | LEU454 |
| F | HOH718 |
| F | HOH724 |
| F | HOH996 |
| site_id | AE5 |
| Number of Residues | 28 |
| Details | binding site for residue TD6 G 601 |
| Chain | Residue |
| G | ASN390 |
| G | SER391 |
| G | LEU392 |
| G | ARG395 |
| G | ARG413 |
| G | SER416 |
| G | GLY417 |
| G | ILE418 |
| G | ASP419 |
| G | GLY441 |
| G | ASP442 |
| G | LEU443 |
| G | SER444 |
| G | ASN469 |
| G | GLY471 |
| G | GLY472 |
| G | GLN473 |
| G | ILE474 |
| G | MN602 |
| G | HOH789 |
| G | HOH832 |
| G | HOH847 |
| G | HOH1090 |
| H | PRO30 |
| H | GLU55 |
| H | THR81 |
| H | ASN117 |
| H | GLN118 |
| site_id | AE6 |
| Number of Residues | 5 |
| Details | binding site for residue MN G 602 |
| Chain | Residue |
| G | ASP442 |
| G | ASN469 |
| G | GLY471 |
| G | TD6601 |
| G | HOH832 |
| site_id | AE7 |
| Number of Residues | 8 |
| Details | binding site for residue GOL G 603 |
| Chain | Residue |
| G | HIS49 |
| G | HIS50 |
| G | THR51 |
| G | ARG430 |
| G | LEU454 |
| G | GLN457 |
| G | HOH746 |
| G | HOH1021 |
| site_id | AE8 |
| Number of Residues | 5 |
| Details | binding site for residue GOL G 604 |
| Chain | Residue |
| G | ARG364 |
| G | HIS374 |
| G | ARG375 |
| G | ASP378 |
| G | HOH964 |
| site_id | AE9 |
| Number of Residues | 6 |
| Details | binding site for residue MN G 605 |
| Chain | Residue |
| F | GLU16 |
| F | HOH841 |
| F | HOH896 |
| F | HOH999 |
| F | HOH1203 |
| G | GLU354 |
| site_id | AF1 |
| Number of Residues | 28 |
| Details | binding site for residue TD6 H 601 |
| Chain | Residue |
| G | PRO30 |
| G | GLU55 |
| G | THR81 |
| G | ALA82 |
| G | ASN117 |
| G | GLN118 |
| H | ASN390 |
| H | SER391 |
| H | LEU392 |
| H | ARG395 |
| H | ARG413 |
| H | SER416 |
| H | GLY417 |
| H | ILE418 |
| H | ASP419 |
| H | GLY441 |
| H | ASP442 |
| H | LEU443 |
| H | SER444 |
| H | ASN469 |
| H | GLY471 |
| H | GLY472 |
| H | GLN473 |
| H | ILE474 |
| H | MN602 |
| H | HOH815 |
| H | HOH826 |
| H | HOH963 |
| site_id | AF2 |
| Number of Residues | 5 |
| Details | binding site for residue MN H 602 |
| Chain | Residue |
| H | ASP442 |
| H | ASN469 |
| H | GLY471 |
| H | TD6601 |
| H | HOH815 |
| site_id | AF3 |
| Number of Residues | 9 |
| Details | binding site for residue GOL H 603 |
| Chain | Residue |
| H | HIS49 |
| H | HIS50 |
| H | THR51 |
| H | ARG430 |
| H | LEU454 |
| H | GLN457 |
| H | HOH715 |
| H | HOH794 |
| H | HOH845 |
| site_id | AF4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL H 604 |
| Chain | Residue |
| H | ARG364 |
| H | HIS374 |
| H | ARG375 |
| H | ASP378 |
| H | HOH925 |
