5EEK
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Hdac6 protein | polymer | 364 | 40285.5 | 1 | UniProt (A7YT55) Pfam (PF00850) UniProt (by SIFTS) (F8W4B7) | Danio rerio (Zebrafish) | histone deacetylase 6 |
| 2 | B (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 3 | C, D (A) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) PubChem (813) | |||
| 4 | E (A) | TRICHOSTATIN A | non-polymer | 302.4 | 1 | Chemie (TSN) PubChem (5562) PubChem (35026063) PubChem (105115) PubChem (444732) PubChem (6376322) PubChem (13507024) PubChem (132586820) PubChem (162343489) PubChem (162942975) | |||
| 5 | AA, BA, F, G, H... (A) | IODIDE ION | non-polymer | 126.9 | 26 | Chemie (IOD) PubChem (30165) | |||
| 6 | CA, EA, FA, GA, HA... (A) | AMMONIUM ION | non-polymer | 18.0 | 6 | Chemie (NH4) PubChem (223) | |||
| 7 | DA (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) PubChem (312) | |||
| 8 | MA (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 9 | NA, OA (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 10 | PA (A) | water | water | 18.0 | 376 | Chemie (HOH) |
Sequence modifications
A: 440 - 798 (UniProt: A7YT55)
| PDB | External Database | Details |
|---|---|---|
| Ser 435 | - | expression tag |
| Asn 436 | - | expression tag |
| Ala 437 | - | expression tag |
| Gly 438 | - | expression tag |
| Gly 439 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 40285.5 | |
| Non-Polymers* | Number of molecules | 40 |
| Total formula weight | 4105.4 | |
| All* | Total formula weight | 44390.9 |
