5E8E
Crystal structure of thrombin bound to an exosite 1-specific IgA Fab
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | IGA FAB LIGHT CHAIN | polymer | 215 | 23544.3 | 1 | Homo sapiens (HUMAN) | ||
2 | B | IGA FAB HEAVY CHAIN | polymer | 229 | 24768.6 | 1 | Homo sapiens (HUMAN) | ||
3 | H | THROMBIN HEAVY CHAIN | polymer | 259 | 29780.2 | 1 | UniProt (P00734) Pfam (PF00089) In PDB | Homo sapiens (Human) | Coagulation factor II |
4 | L | THROMBIN LIGHT CHAIN | polymer | 36 | 4096.5 | 1 | UniProt (P00734) Pfam (PF09396) In PDB | Homo sapiens (Human) | Coagulation factor II |
5 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | D | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1405.3 | 1 | In PDB GlyTouCan (G08394CG) | |||
7 | A, H | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
8 | B, H | PHOSPHATE ION | non-polymer | 95.0 | 5 | Chemie (PO4) | |||
9 | H | CITRIC ACID | non-polymer | 192.1 | 1 | Chemie (CIT) | |||
10 | H | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
11 | H | D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide | non-polymer | 454.0 | 1 | BIRD (PRD_000020) Chemie (0G6) | |||
12 | water | water | 18.0 | 407 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 82189.6 | |
Branched | Number of molecules | 2 |
Total formula weight | 1829.7 | |
Non-Polymers* | Number of molecules | 11 |
Total formula weight | 1462.3 | |
All* | Total formula weight | 85481.6 |