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5E1D

NTMT1 in complex with YPKRIA peptide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
N-terminal Xaa-Pro-Lys N-methyltransferase 1polymer24127320.12UniProt (Q9BV86)
Pfam (PF05891)
Homo sapiens (Human)Alpha N-terminal protein methyltransferase 1A,Methyltransferase-like protein 11A,N-terminal RCC1 methyltransferase,X-Pro-Lys N-terminal protein methyltransferase 1A,NTM1A
2C, D
(D, E)
RCC1polymer6748.92UniProt (by SIFTS) (P18754)Homo sapiens
3E, TA
(A, B)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.42Chemie (SAH)
PubChem (193)
PubChem (13792)
PubChem (189149)
PubChem (439155)
PubChem (5284331)
PubChem (71170554)
PubChem (13231890)
PubChem (16760024)
PubChem (25210495)
PubChem (44361184)
PubChem (177678424)
PubChem (46936206)
PubChem (21125603)
PubChem (25203782)
PubChem (52224400)
PubChem (50989525)
PubChem (51380914)
PubChem (52224398)
PubChem (6419189)
PubChem (57544532)
PubChem (59046843)
PubChem (59170628)
PubChem (164157219)
PubChem (59576228)
PubChem (66805708)
PubChem (70689219)
PubChem (70702054)
PubChem (70832431)
PubChem (118374891)
PubChem (118560068)
PubChem (126969526)
PubChem (129105892)
PubChem (143518505)
PubChem (154578335)
PubChem (163054214)
PubChem (163335525)
4F, G, H, UA
(A, B)
GLYCEROLnon-polymer92.14Chemie (GOL)
PubChem (753)
5AA, AB, BA, BB, CA...
(A, B)
UNKNOWN LIGANDnon-polymer57Chemie (UNX)
6PB, QB, RB, SB
(A, B, D, E)
waterwater18.0388Chemie (HOH)
Sequence modifications
A, B: 2 - 223 (UniProt: Q9BV86)
PDBExternal DatabaseDetails
Met -17-expression tag
Gly -16-expression tag
Ser -15-expression tag
Ser -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
Ser -7-expression tag
Ser -6-expression tag
Gly -5-expression tag
Leu -4-expression tag
Val -3-expression tag
Pro -2-expression tag
Arg -1-expression tag
Gly 0-expression tag
Ser 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight56138.0
Non-Polymers*Number of molecules63
Total formula weight1137.2
All*Total formula weight57275.2
*Water molecules are not included.

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PDB entries from 2026-04-08

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