5DZY
Protocadherin beta 8 extracellular cadherin domains 1-4
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Pcdhb8 protein | polymer | 426 | 46732.9 | 6 | UniProt (A8E4K6) Pfam (PF08266) Pfam (PF00028) UniProt (by SIFTS) (Q91XZ2) | Mus musculus (Mouse) | |
| 2 | G, H, K (G, H, K) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 3 | In PDB GlyTouCan (G86851RC) | |||
| 3 | I (I) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1625.5 | 1 | In PDB GlyTouCan (G71513XV) | |||
| 4 | J (J) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 5 | L (L) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G42466VF) | |||
| 6 | AA, BA, JB, KB, LA... (B, E, C, A, D...) | alpha-D-mannopyranose | non-polymer | 180.2 | 18 | Chemie (MAN) | |||
| 7 | AB, AC, BB, BC, CA... (D, F, B, E, C...) | CALCIUM ION | non-polymer | 40.1 | 54 | Chemie (CA) | |||
| 8 | VB, WB, Y (F, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 9 | JC, KC, LC, MC, NC (A, C, D, E, F) | water | water | 18.0 | 6 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 418 (UniProt: A8E4K6)
| PDB | External Database | Details |
|---|---|---|
| His 419 | - | expression tag |
| His 420 | - | expression tag |
| His 421 | - | expression tag |
| His 422 | - | expression tag |
| His 423 | - | expression tag |
| His 424 | - | expression tag |
| His 425 | - | expression tag |
| His 426 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 280397.6 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 4208.9 | |
| Non-Polymers* | Number of molecules | 75 |
| Total formula weight | 6070.6 | |
| All* | Total formula weight | 290677.2 |
