5DYS
Crystal Structure of T94I rhodopsin mutant
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Rhodopsin | polymer | 349 | 39046.6 | 1 | UniProt (P02699) Pfam (PF10413) Pfam (PF00001) | Bos taurus (Bovine) | |
| 2 | B (B) | alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G51945PF) | |||
| 3 | C (A) | RETINAL | non-polymer | 284.4 | 1 | Chemie (RET) PubChem (1070) PubChem (23254473) PubChem (177675058) PubChem (638015) PubChem (5353924) PubChem (6436079) PubChem (6436082) PubChem (87082476) PubChem (87110449) PubChem (87110609) PubChem (88398773) PubChem (88407543) PubChem (11426127) PubChem (12227253) PubChem (12227254) PubChem (12227256) PubChem (12227257) PubChem (12227258) PubChem (12227259) PubChem (12227269) PubChem (12227270) PubChem (12227271) PubChem (5280490) PubChem (5381765) PubChem (134688327) PubChem (140510408) PubChem (145826762) PubChem (169423542) PubChem (172878320) | |||
| 4 | D, E (A) | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) PubChem (175) | |||
| 5 | F, I (A) | octyl beta-D-glucopyranoside | non-polymer | 292.4 | 2 | Chemie (BOG) | |||
| 6 | G, H (A) | PALMITIC ACID | non-polymer | 256.4 | 2 | Chemie (PLM) | |||
| 7 | J (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 8 | K (A) | water | water | 18.0 | 29 | Chemie (HOH) |
Sequence modifications
A: 1 - 348 (UniProt: P02699)
| PDB | External Database | Details |
|---|---|---|
| Ace 0 | - | acetylation |
| Cys 2 | Asn 2 | engineered mutation |
| Ile 94 | Thr 94 | engineered mutation |
| Cys 282 | Asp 282 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 39046.6 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 910.8 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1596.2 | |
| All* | Total formula weight | 41553.6 |
