5DGV

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

This is a large structure.

Entity

Chain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
2, 6Saccharomyces cerevisiae S288c RDN37-1 miscRNApolymer1800579761.92
REF (831416132)
Saccharomyces cerevisiae S288c
S0, s040S ribosomal protein S0-Apolymer25127920.12
UniProt (P32905)
Pfam (PF00318)
Saccharomyces cerevisiae S288cNucleic acid-binding protein NAB1A
S1, s140S ribosomal protein S1-Apolymer25428667.32
UniProt (P33442)
Pfam (PF01015)
Saccharomyces cerevisiae S288cRP10A
S2, s240S ribosomal protein S2polymer25327359.62
UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
Saccharomyces cerevisiae S288cOmnipotent suppressor protein SUP44,RP12,S4,YS5
S3, s340S ribosomal protein S3polymer23926411.62
UniProt (P05750)
Pfam (PF00189)
Pfam (PF07650)
Saccharomyces cerevisiae S288cRP13,YS3
S4, s440S ribosomal protein S4-Apolymer26029338.12
UniProt (P0CX35)
Pfam (PF00467)
Pfam (PF00900)
Pfam (PF01479)
Pfam (PF08071)
Pfam (PF16121)
Saccharomyces cerevisiae S288cRP5,S7,YS6
S5, s540S ribosomal protein S5polymer22424941.42
UniProt (P26783)
Pfam (PF00177)
Saccharomyces cerevisiae S288cRP14,S2,YS8
S6, s640S ribosomal protein S6-Apolymer23627054.52
UniProt (P0CX37)
Pfam (PF01092)
Saccharomyces cerevisiae S288cRP9,S10,YS4
S7, s740S ribosomal protein S7-Apolymer18921527.02
UniProt (P26786)
Pfam (PF01251)
Saccharomyces cerevisiae S288cRP30,RP40
S8, s840S ribosomal protein S8-Apolymer20022537.82
UniProt (P0CX39)
Pfam (PF01201)
Saccharomyces cerevisiae S288cRP19,S14,YS9
S9, s940S ribosomal protein S9-Apolymer19622356.72
UniProt (O13516)
Pfam (PF01479)
Saccharomyces cerevisiae S288cRP21,S13,YP28,YS11
C0, c040S ribosomal protein S10-Apolymer10512771.52
UniProt (Q08745)
Pfam (PF03501)
Saccharomyces cerevisiae S288c40S ribosomal protein S10-A (eS10)
C1, c140S ribosomal protein S11-Apolymer15517654.72
UniProt (P0CX47)
Pfam (PF00366)
Pfam (PF16205)
Saccharomyces cerevisiae S288cRP41,S18,YS12, 40S ribosomal protein S11-A (uS17)
C2, c240S ribosomal protein S12polymer14215385.52
UniProt (P48589)
Pfam (PF01248)
Saccharomyces cerevisiae S288c
C3, c340S ribosomal protein S13polymer15016928.72
UniProt (P05756)
Pfam (PF00312)
Saccharomyces cerevisiae S288cS27a,YS15
C4, c440S ribosomal protein S14-Apolymer13614431.52
UniProt (P06367)
Pfam (PF00411)
Saccharomyces cerevisiae S288cRP59A
C5, c540S ribosomal protein S15polymer14115900.72
UniProt (Q01855)
Pfam (PF00203)
Saccharomyces cerevisiae S288cRIG protein,RP52,S21,YS21, 40S ribosomal protein S15 (uS19)
C6, c640S ribosomal protein S16-Apolymer14215746.32
UniProt (P0CX51)
Pfam (PF00380)
Saccharomyces cerevisiae S288cRP61R
C7, c740S ribosomal protein S17-Apolymer13615820.42
UniProt (P02407)
Pfam (PF00833)
Saccharomyces cerevisiae S288cRP51A
C8, c840S ribosomal protein S18-Apolymer14516940.42
UniProt (P0CX55)
Pfam (PF00416)
Saccharomyces cerevisiae S288c
C9, c940S ribosomal protein S19-Apolymer14315810.92
UniProt (P07280)
Pfam (PF01090)
Saccharomyces cerevisiae S288cRP55A,S16a,YP45,YS16A
D0, d040S ribosomal protein S20polymer12013797.92
UniProt (P38701)
Pfam (PF00338)
Saccharomyces cerevisiae S288c
D1, d140S ribosomal protein S21-Apolymer879758.82
UniProt (P0C0V8)
Pfam (PF01249)
Saccharomyces cerevisiae S288cS26,YS25
D2, d240S ribosomal protein S22-Apolymer12914518.92
UniProt (P0C0W1)
Pfam (PF00410)
Saccharomyces cerevisiae S288cRP50,S24,YP58,YS22
D3, d340S ribosomal protein S23-Apolymer14415942.72
UniProt (P0CX29)
Pfam (PF00164)
Saccharomyces cerevisiae S288cRP37,S28,YS14
D4, d440S ribosomal protein S24-Apolymer13415231.72
UniProt (P0CX31)
Pfam (PF01282)
Saccharomyces cerevisiae S288cRP50
D5, d540S ribosomal protein S25-Apolymer10711936.12
UniProt (Q3E792)
Pfam (PF03297)
Saccharomyces cerevisiae S288cRP45,S31,YS23
D6, d640S ribosomal protein S26-Bpolymer9711023.02
UniProt (P39939)
Saccharomyces cerevisiae S288c
D7, d740S ribosomal protein S27-Apolymer818762.22
UniProt (P35997)
Pfam (PF01667)
Saccharomyces cerevisiae S288cRP61,YS20
D8, d840S ribosomal protein S28-Apolymer667474.72
UniProt (Q3E7X9)
Pfam (PF01200)
Saccharomyces cerevisiae S288cS33,YS27
D9, d940S ribosomal protein S29-Apolymer556544.52
UniProt (P41057)
Pfam (PF00253)
Saccharomyces cerevisiae S288cS36,YS29
E040S ribosomal protein S30-Apolymer606779.11
UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae S288c
E1, e1Ubiquitin-40S ribosomal protein S31polymer768703.52
UniProt (P05759)
Pfam (PF01599)
Saccharomyces cerevisiae S288c
SR, sRGuanine nucleotide-binding protein subunit beta-like proteinpolymer31834710.02
UniProt (P38011)
Pfam (PF00400)
Saccharomyces cerevisiae S288cReceptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1
SM, sMSuppressor protein STM1polymer26328083.12
Saccharomyces cerevisiae S288c
1, 525S ribosomal RNApolymer33961097493.92
REF (831416132)
Saccharomyces cerevisiae S288c
3, 75S ribosomal RNApolymer12138951.12
GenBank (CP011821.1)
Saccharomyces cerevisiae S288c
4, 85.8S ribosomal RNApolymer15850682.92
GenBank (KT207123.1)
Saccharomyces cerevisiae S288c
L2, l260S ribosomal protein L2-Apolymer25327332.42
UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae S288cL5,RP8,YL6
L3, l360S ribosomal protein L3polymer38643719.62
UniProt (P14126)
Saccharomyces cerevisiae S288cMaintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
L4, l460S ribosomal protein L4-Apolymer36139027.92
UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae S288cL2,RP2,YL2
L5, l560S ribosomal protein L5polymer29633633.62
UniProt (P26321)
Pfam (PF14204)
Pfam (PF17144)
Saccharomyces cerevisiae S288cL1,L1a,Ribosomal 5S RNA-binding protein,YL3
L6, l660S ribosomal protein L6-Apolymer17519869.42
UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae S288cL17,RP18,YL16
L7, l760S ribosomal protein L7-Apolymer24327555.12
UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
Saccharomyces cerevisiae S288cL6,RP11,YL8
L8, l860S ribosomal protein L8-A (eL8)polymer25528058.62
Saccharomyces cerevisiae S288c
L9, l960S ribosomal protein L9-Apolymer19121605.12
UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae S288cL8,RP24,YL11
M0, m060S ribosomal protein L10polymer22025279.32
UniProt (P41805)
Pfam (PF00252)
Saccharomyces cerevisiae S288cL9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
M1, m160S ribosomal protein L11-Bpolymer17319654.52
UniProt (Q3E757)
Pfam (PF00281)
Pfam (PF00673)
Saccharomyces cerevisiae S288cL16,RP39,YL22
M3, m360S ribosomal protein L13-Apolymer19822473.02
UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae S288c
M4, m460S ribosomal protein L14-Apolymer13715063.92
UniProt (P36105)
Pfam (PF01929)
Saccharomyces cerevisiae S288c
M5, m560S ribosomal protein L15-Apolymer20324351.22
UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae S288cL13,RP15R,YL10,YP18
M6, m660S ribosomal protein L16-Apolymer19822116.02
UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae S288cL13a,L21,RP22,YL15
M7, m760S ribosomal protein L17-Apolymer18320458.32
UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae S288cL20A,YL17
M8, m860S ribosomal protein L18-Apolymer18520478.12
UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae S288cRP28
M9, m960S ribosomal protein L19-Apolymer18821631.12
UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae S288cL23,RP15L,RP33,YL14
N0, n060S ribosomal protein L20-Apolymer17220478.92
UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae S288cL18a
N1, n160S ribosomal protein L21-Apolymer15918148.12
UniProt (Q02753)
Saccharomyces cerevisiae S288c
N2, n260S ribosomal protein L22-Apolymer12013580.22
UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae S288cL1c,RP4,YL31
N3, n360S ribosomal protein L23-Apolymer13614362.82
UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae S288cL17a,YL32
N4, n460S ribosomal protein L24-Apolymer15517661.72
UniProt (P04449)
Pfam (PF01246)
Saccharomyces cerevisiae S288cL30,RP29,YL21
N5, n560S ribosomal protein L25polymer14115656.42
UniProt (P04456)
Pfam (PF00276)
Pfam (PF03939)
Saccharomyces cerevisiae S288cRP16L,YL25,YP42'
N6, n660S ribosomal protein L26-Apolymer12614134.62
UniProt (P05743)
Pfam (PF00467)
Pfam (PF16906)
Saccharomyces cerevisiae S288cL33,YL33
N7, n760S ribosomal protein L27-Apolymer13515437.22
UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae S288c
N8, n860S ribosomal protein L28polymer14816630.52
UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae S288cL27a,L29,RP44,RP62,YL24
N9, n960S ribosomal protein L29polymer586560.72
UniProt (P05747)
Pfam (PF01779)
Saccharomyces cerevisiae S288cYL43
O0, o060S ribosomal protein L30polymer10411299.22
UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae S288cL32,RP73,YL38
O1, o160S ribosomal protein L31-Apolymer11212849.02
UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae S288cL34,YL28
O2, o260S ribosomal protein L32polymer12914678.22
UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae S288c
O3, o360S ribosomal protein L33-Apolymer10612045.92
UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae S288cL37,RP47,YL37
O4, o460S ribosomal protein L34-Apolymer11913412.82
UniProt (P87262)
Saccharomyces cerevisiae S288c
O5, o560S ribosomal protein L35-Apolymer11913811.42
UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae S288c
O6, o660S ribosomal protein L36-Apolymer9911020.12
UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae S288cL39,YL39
O7, o760S ribosomal protein L37-Apolymer879746.22
UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae S288cL43,YL35,YP55
O8, o860S ribosomal protein L38polymer778714.42
UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae S288c
O9, o960S ribosomal protein L39polymer506227.42
UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae S288cL46,YL40
Q0, q0Ubiquitin-60S ribosomal protein L40polymer526032.32
UniProt (P0CH08)
Pfam (PF01020)
Saccharomyces cerevisiae S288c
Q1, q160S ribosomal protein L41-Apolymer253354.22
UniProt (P0CX86)
Pfam (PF05162)
Saccharomyces cerevisiae S288cL47,YL41
Q2, q260S ribosomal protein L42-Apolymer10512115.52
UniProt (P0CX27)
Pfam (PF00935)
Saccharomyces cerevisiae S288cL41,YL27,YP44
Q3, q360S ribosomal protein L43-Apolymer919981.82
UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae S288cL37a,YL35
e040S ribosomal protein S30-Apolymer627006.31
UniProt (P0CX33)
Pfam (PF04758)
Saccharomyces cerevisiae S288c
m260S ribosomal protein L12-A (uL11)polymer16013634.81
Saccharomyces cerevisiae S288c
p060S acidic ribosomal protein P0polymer31133617.91
UniProt (P05317)
Pfam (PF00428)
Pfam (PF00466)
Pfam (PF17777)
Saccharomyces cerevisiae S288cA0,L10E
p160S ribosomal protein P1 alpha/P2 betapolymer474017.91
Saccharomyces cerevisiae S288c
p260S ribosomal protein P1 alpha/P2 betapolymer463932.81
Saccharomyces cerevisiae S288c
C, DDNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')polymer51087.92
Saccharomyces cerevisiae S288c
ZINC IONnon-polymer65.416
SPARSOMYCINnon-polymer361.42
MAGNESIUM IONnon-polymer24.32

Sequence viewer

Contents of the asymmetric unit

PolymersNumber of chains164
Total molecular weight6269420.6
Non-Polymers*Number of molecules20
Total molecular weight1818.0
All*Total molecular weight6271238.6
*Water molecules are not included.