Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | QV, XV | P-site tRNA fMet | polymer | 77 | 24802.8 | 2 | GenBank (1016582139) | Escherichia coli | |
2 | QX, XX | messenger RNA | polymer | 25 | 8196.0 | 2 | synthetic construct | ||
3 | QY, XY | Peptide chain release factor 2 | polymer | 380 | 42991.4 | 2 | UniProt (P07012) Pfam (PF03462) Pfam (PF00472) In PDB | Escherichia coli (strain K12) | RF-2 |
4 | YA, RA | T23S rRNA | polymer | 2915 | 948035.6 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
5 | YB, RB | 5S rRNA | polymer | 122 | 39494.5 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
6 | YD, RD | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
7 | YE, RE | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (Q5SHN8) Pfam (PF00297) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
8 | YF, RF | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | L1e |
9 | YG, RG | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
10 | YH, RH | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (Q5SHQ3) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
11 | YI, RI | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
12 | YN, RN | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (P60488) Pfam (PF00572) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
13 | YO, RO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
14 | YP, RP | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
15 | YQ, RQ | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
16 | YR, RR | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
17 | YS, RS | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL24 |
18 | YT, RT | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
19 | YU, RU | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (P60491) Pfam (PF00453) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
20 | YV, RV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
21 | YW, RW | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q5SHP3) Pfam (PF00237) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
22 | YX, RX | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q5SHP0) Pfam (PF00276) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
23 | YY, RY | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
24 | YZ, RZ | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TL5 |
25 | Y0, R0 | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
26 | Y1, R1 | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
27 | Y2, R2 | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q5SHP6) Pfam (PF00831) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
28 | Y3, R3 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
29 | Y4, R4 | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q5SJE1) Pfam (PF01197) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
30 | Y5, R5 | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
31 | Y6, R6 | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (P35871) Pfam (PF00471) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
32 | Y7, R7 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
33 | Y8, R8 | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (Q5SKU1) Pfam (PF01632) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
34 | Y9, R9 | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q5SHR2) Pfam (PF00444) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | Ribosomal protein B |
35 | XA, QA | 16S rRNA | polymer | 1521 | 493864.6 | 2 | GenBank (55771382) | Thermus thermophilus HB8 | |
36 | XB, QB | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
37 | XC, QC | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
38 | XD, QD | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
39 | XE, QE | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
40 | XF, QF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TS9 |
41 | XG, QG | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
42 | XH, QH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (Q5SHQ2) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
43 | XI, QI | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
44 | XJ, QJ | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
45 | XK, QK | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
46 | XL, QL | 30S ribosomal protein S12 | polymer | 132 | 14683.5 | 2 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
47 | XM, QM | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
48 | XN, QN | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (Q5SHQ1) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
49 | XO, QO | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
50 | XP, QP | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
51 | XQ, QQ | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (Q5SHP7) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
52 | XR, QR | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
53 | XS, QS | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
54 | XT, QT | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
55 | XU, QU | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
56 | YA, QA, RA, QD, YB... | MAGNESIUM ION | non-polymer | 24.3 | 2513 | Chemie (MG) | |||
57 | XN, Y5, R5, Y6, R6... | ZINC ION | non-polymer | 65.4 | 12 | Chemie (ZN) | |||
58 | XD, QD | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) |
Sequence modifications
QY, XY: 1 - 365 (UniProt: P07012)
PDB | External Database | Details |
---|---|---|
Met -14 | - | initiating methionine |
Gly -13 | - | expression tag |
Ser -12 | - | expression tag |
Ser -11 | - | expression tag |
His -10 | - | expression tag |
His -9 | - | expression tag |
His -8 | - | expression tag |
His -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
Ser -4 | - | expression tag |
Glu -3 | - | expression tag |
Asp -2 | - | expression tag |
Pro -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 110 |
Total formula weight | 4489581.6 | |
Non-Polymers* | Number of molecules | 2527 |
Total formula weight | 62566.7 | |
All* | Total formula weight | 4552148.3 |