5DAR
CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, D) | 74 nt fragment of 23S rRNA | polymer | 74 | 23928.3 | 2 | GenBank (470491724) | Methanocaldococcus jannaschii | |
| 2 | B, E (B, E) | 50S ribosomal protein L10 | polymer | 213 | 23353.8 | 2 | UniProt (P54049) Pfam (PF00466) Pfam (PF17777) | Methanocaldococcus jannaschii | Acidic ribosomal protein P0 homolog,MjaL10 |
| 3 | C, F (C, F) | 50S ribosomal protein L11 | polymer | 161 | 17513.3 | 2 | UniProt (P54030) Pfam (PF03946) Pfam (PF00298) | Methanocaldococcus jannaschii | |
| 4 | G, H, I, J, K... (A, D) | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) | |||
| 5 | L, O, U (A, B, F) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 6 | M, N, P, T, V (A, C, D, F) | POTASSIUM ION | non-polymer | 39.1 | 5 | Chemie (K) | |||
| 7 | W, X, Y, Z (A, C, D, E) | water | water | 18.0 | 14 | Chemie (HOH) |
Sequence modifications
A, D: 1151 - 1224 (GenBank: 470491724)
B, E: 9 - 221 (UniProt: P54049)
| PDB | External Database | Details |
|---|---|---|
| C 1224 | U 1224 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 9 | Val 9 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 129590.8 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 496.3 | |
| All* | Total formula weight | 130087.1 |
