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5DAR

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Functional Information from GO Data
ChainGOidnamespacecontents
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0015934cellular_componentlarge ribosomal subunit
C0019843molecular_functionrRNA binding
C0070180molecular_functionlarge ribosomal subunit rRNA binding
C1990904cellular_componentribonucleoprotein complex
F0003735molecular_functionstructural constituent of ribosome
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0015934cellular_componentlarge ribosomal subunit
F0019843molecular_functionrRNA binding
F0070180molecular_functionlarge ribosomal subunit rRNA binding
F1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 1301
ChainResidue
AA1179
AA1180
AC1182
AA1183

site_idAC2
Number of Residues2
Detailsbinding site for residue MG A 1302
ChainResidue
AG1166
AU1211

site_idAC3
Number of Residues2
Detailsbinding site for residue MG A 1303
ChainResidue
AA1183
AU1204

site_idAC4
Number of Residues5
Detailsbinding site for residue MG A 1304
ChainResidue
AA1167
AA1196
AG1197
AG1199
AG1166

site_idAC5
Number of Residues6
Detailsbinding site for residue MG A 1305
ChainResidue
AU1191
AU1192
AU1193
AA1196
AHOH1402
AHOH1405

site_idAC6
Number of Residues3
Detailsbinding site for residue CL A 1306
ChainResidue
AG1164
AG1165
AA1194

site_idAC7
Number of Residues4
Detailsbinding site for residue K A 1307
ChainResidue
AU1171
AG1172
AG1173
AA1180

site_idAC8
Number of Residues6
Detailsbinding site for residue K A 1308
ChainResidue
AC1216
BMET58
BSER59
BASN61
BARG89
BALA91

site_idAC9
Number of Residues2
Detailsbinding site for residue CL B 301
ChainResidue
BLYS79
BILE204

site_idAD1
Number of Residues3
Detailsbinding site for residue K C 201
ChainResidue
CLYS110
CMET113
CSER115

site_idAD2
Number of Residues2
Detailsbinding site for residue MG D 1301
ChainResidue
DA1183
DU1204

site_idAD3
Number of Residues2
Detailsbinding site for residue MG D 1302
ChainResidue
DA1180
DC1182

site_idAD4
Number of Residues6
Detailsbinding site for residue MG D 1303
ChainResidue
DHOH1401
DHOH1402
DHOH1404
DHOH1405
DHOH1406
DHOH1407

site_idAD5
Number of Residues4
Detailsbinding site for residue K D 1304
ChainResidue
DA1179
DA1180
DC1182
DA1183

site_idAD6
Number of Residues3
Detailsbinding site for residue CL F 201
ChainResidue
FMET108
FLYS109
FALA112

site_idAD7
Number of Residues4
Detailsbinding site for residue K F 202
ChainResidue
EASP48
FMET113
FLEU114
FSER115

Functional Information from PROSITE/UniProt
site_idPS00359
Number of Residues16
DetailsRIBOSOMAL_L11 Ribosomal protein L11 signature. KeVlGTcgSMGvTVeG
ChainResidueDetails
CLYS123-GLY138

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PDB entries from 2024-06-12

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