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5D9I

SV40 Large T antigen origin binding domain bound to artificial DNA fork

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Large T antigenpolymer13415490.82UniProt (P03070)
Pfam (PF02217)
Simian virus 40 (SV40)LT-AG
2C
(X)
DNA (5'-D(*GP*AP*GP*GP*AP*GP*GP*CP*TP*TP*TP*TP*TP*TP*GP*GP*AP*GP*GP*CP*C)-3')polymer216550.21synthetic construct
3D
(Y)
DNA (5'-D(*AP*CP*TP*CP*CP*TP*CP*CP*GP*AP*AP*AP*AP*AP*AP*CP*CP*TP*CP*CP*GP*GP*A)-3')polymer236963.51synthetic construct
4E, G
(A, B)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
5F, H
(B, Y)
CALCIUM IONnon-polymer40.12Chemie (CA)
6I
(Y)
ACETATE IONnon-polymer59.01Chemie (ACT)
7J, K, L, M
(A, B, X, Y)
waterwater18.0230Chemie (HOH)
Sequence modifications
A, B: 131 - 260 (UniProt: P03070)
PDBExternal DatabaseDetails
Gly 129-expression tag
Ser 130-expression tag
Ser 261-expression tag
Ser 262-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight44495.3
Non-Polymers*Number of molecules5
Total formula weight263.3
All*Total formula weight44758.6
*Water molecules are not included.

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PDB entries from 2025-07-30

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