5D7C
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | DNA gyrase subunit B | polymer | 212 | 23931.6 | 2 | UniProt (P0A0K8) Pfam (PF02518) In PDB | Staphylococcus aureus | |
| 2 | A, B | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 4 | Chemie (MPD) | |||
| 3 | A, B | 1-ethyl-3-[1-(pyridin-2-yl)-6-(pyridin-3-yl)-1H-pyrrolo[3,2-b]pyridin-3-yl]urea | non-polymer | 358.4 | 2 | Chemie (57W) | |||
| 4 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 8 | Chemie (MG) | |||
| 5 | water | water | 18.0 | 342 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 234 (UniProt: P0A0K8)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
| - | Val 105 | deletion |
| - | Leu 106 | deletion |
| - | His 107 | deletion |
| - | Ala 108 | deletion |
| - | Gly 109 | deletion |
| - | Gly 110 | deletion |
| - | Lys 111 | deletion |
| - | Phe 112 | deletion |
| - | Gly 113 | deletion |
| - | Gly 114 | deletion |
| - | Gly 115 | deletion |
| - | Gly 116 | deletion |
| - | Tyr 117 | deletion |
| - | Lys 118 | deletion |
| - | Val 119 | deletion |
| - | Ser 120 | deletion |
| - | Gly 121 | deletion |
| - | Gly 122 | deletion |
| - | Leu 123 | deletion |
| - | His 124 | deletion |
| - | Gly 125 | deletion |
| - | Val 126 | deletion |
| - | Gly 127 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 47863.2 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 1383.9 | |
| All* | Total formula weight | 49247.1 |
