5D7C
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2010-09-02 |
| Detector | RIGAKU RAXIS IV++ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 142.803, 55.485, 51.422 |
| Unit cell angles | 90.00, 100.77, 90.00 |
Refinement procedure
| Resolution | 37.780 - 1.550 |
| R-factor | 0.1726 |
| Rwork | 0.171 |
| R-free | 0.19930 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1kzn |
| RMSD bond length | 0.030 |
| RMSD bond angle | 2.734 |
| Data reduction software | d*TREK |
| Data scaling software | d*TREK (9.9.8.6 W9RSSI) |
| Phasing software | MOLREP (10.2.35) |
| Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 45.190 | 45.190 | 1.610 |
| High resolution limit [Å] | 1.550 | 3.340 | 1.550 |
| Rmerge | 0.044 | 0.041 | 0.248 |
| Total number of observations | 132107 | 14537 | 8680 |
| Number of reflections | 55678 | ||
| <I/σ(I)> | 11.8 | 32.1 | 3.7 |
| Completeness [%] | 96.8 | 93.3 | 79.3 |
| Redundancy | 2.35 | 2.52 | 1.9 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 296 | 40-43% MPD_P1K_P3350, 100 mM Mops/Na-Hepes, 100 mM Divalents |






