5D7C
Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2010-09-02 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 142.803, 55.485, 51.422 |
Unit cell angles | 90.00, 100.77, 90.00 |
Refinement procedure
Resolution | 37.780 - 1.550 |
R-factor | 0.1726 |
Rwork | 0.171 |
R-free | 0.19930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kzn |
RMSD bond length | 0.030 |
RMSD bond angle | 2.734 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.9.8.6 W9RSSI) |
Phasing software | MOLREP (10.2.35) |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.190 | 45.190 | 1.610 |
High resolution limit [Å] | 1.550 | 3.340 | 1.550 |
Rmerge | 0.044 | 0.041 | 0.248 |
Total number of observations | 132107 | 14537 | 8680 |
Number of reflections | 55678 | ||
<I/σ(I)> | 11.8 | 32.1 | 3.7 |
Completeness [%] | 96.8 | 93.3 | 79.3 |
Redundancy | 2.35 | 2.52 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 296 | 40-43% MPD_P1K_P3350, 100 mM Mops/Na-Hepes, 100 mM Divalents |