5D0M
Structure of UbE2D2:RNF165:Ub complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Ubiquitin-conjugating enzyme E2 D2 | polymer | 152 | 17214.6 | 1 | UniProt (P62837) Pfam (PF00179) In PDB | Homo sapiens (Human) | Ubiquitin carrier protein D2,Ubiquitin-conjugating enzyme E2(17)KB 2,Ubiquitin-conjugating enzyme E2-17 kDa 2,Ubiquitin-protein ligase D2,p53-regulated ubiquitin-conjugating enzyme 1 |
2 | C | RING finger protein 165 | polymer | 87 | 9799.1 | 1 | UniProt (Q6ZSG1) Pfam (PF13639) In PDB | Homo sapiens (Human) | |
3 | B | Polyubiquitin-B | polymer | 76 | 8576.8 | 1 | UniProt (P0CG47) Pfam (PF00240) In PDB | Homo sapiens (Human) | |
4 | A | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
5 | C | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
6 | water | water | 18.0 | 100 | Chemie (HOH) |
Sequence modifications
A: 1 - 147 (UniProt: P62837)
C: 255 - 346 (UniProt: Q6ZSG1)
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Pro -3 | - | expression tag |
Leu -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Ser 21 | Cys 21 | engineered mutation |
Arg 22 | Ser 22 | engineered mutation |
Lys 85 | Cys 85 | engineered mutation |
Ser 107 | Cys 107 | engineered mutation |
Ser 111 | Cys 111 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 250 | - | expression tag |
Pro 251 | - | expression tag |
Leu 252 | - | expression tag |
Gly 253 | - | expression tag |
Ser 254 | - | expression tag |
- | Arg 273 | deletion |
- | Arg 274 | deletion |
- | Pro 275 | deletion |
- | Gln 276 | deletion |
- | Asp 277 | deletion |
- | Gly 278 | deletion |
- | Lys 279 | deletion |
- | Gly 280 | deletion |
Ala 313 | Met 313 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 35590.6 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 225.8 | |
All* | Total formula weight | 35816.4 |