5CQ0
Crystal structure of murine polyomavirus RA strain VP1 in complex with the GD1a glycan
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Capsid protein VP1 | polymer | 284 | 31558.7 | 5 | UniProt (P49302) Pfam (PF00718) | Murine polyomavirus (strain P16 small-plaque) (MPyV) | |
| 2 | F, G, H, I, J (F, G, H, I, J) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose | branched | 836.7 | 5 | In PDB GlyTouCan (G02162KR) | |||
| 3 | AA, BA, FA, GA, HA... (C, D, A, E, B) | SULFATE ION | non-polymer | 96.1 | 14 | Chemie (SO4) | |||
| 4 | CA, DA, EA, IA, JA... (C, D, A, E, B) | GLYCEROL | non-polymer | 92.1 | 21 | Chemie (GOL) | |||
| 5 | TA, UA, VA, WA, XA (A, B, C, D, E) | water | water | 18.0 | 1793 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 157793.3 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 4183.7 | |
| Non-Polymers* | Number of molecules | 35 |
| Total formula weight | 3278.9 | |
| All* | Total formula weight | 165255.9 |
