5CO4
Structural insights into the 2-OH methylation of C/U34 on tRNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (B, A) | Putative tRNA (cytidine(34)-2'-O)-methyltransferase | polymer | 178 | 20055.2 | 2 | UniProt (Q72G96) | Thermus thermophilus HB27 | TrmL, tRNA (cytidine/uridine-2'-O-)-methyltransferase |
| 2 | C, E (B, A) | 5'-DEOXY-5'-METHYLTHIOADENOSINE | non-polymer | 297.3 | 2 | Chemie (MTA) PubChem (149) PubChem (439176) PubChem (688097) PubChem (6541356) PubChem (13101165) PubChem (13101166) PubChem (25322898) PubChem (40467850) PubChem (44264468) PubChem (46874793) PubChem (51397472) PubChem (99302) PubChem (51397471) PubChem (453683) PubChem (98100246) PubChem (57104771) PubChem (58108938) PubChem (58682801) PubChem (59099797) PubChem (91614589) PubChem (124300729) PubChem (124300795) PubChem (134694842) PubChem (138107656) PubChem (164077596) | |||
| 3 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 4 | F, G (B, A) | water | water | 18.0 | 314 | Chemie (HOH) |
Sequence modifications
B, A: 1 - 149 (UniProt: Q72G96)
| PDB | External Database | Details |
|---|---|---|
| Phe -28 | - | expression tag |
| Cys -27 | - | expression tag |
| Leu -26 | - | expression tag |
| Thr -25 | - | expression tag |
| Leu -24 | - | expression tag |
| Arg -23 | - | expression tag |
| Arg -22 | - | expression tag |
| Arg -21 | - | expression tag |
| Tyr -20 | - | expression tag |
| Thr -19 | - | expression tag |
| Met -18 | - | expression tag |
| Gly -17 | - | expression tag |
| Ser -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Val -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 40110.4 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 686.8 | |
| All* | Total formula weight | 40797.2 |
