5CB7
Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Outer capsid protein VP4 | polymer | 161 | 18379.3 | 2 | UniProt (Q01641) Pfam (PF00426) | Rotavirus A (strain Human/Japan/K8/1977 G1-P3A[9]-Ix-Rx-Cx-Mx-A1-Nx-Tx-Ex-H3) (RV-A) | Hemagglutinin |
| 2 | C, D (C, D) | alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose | branched | 529.5 | 2 | In PDB GlyTouCan (G15611BA) | |||
| 3 | E (B) | 2-acetamido-2-deoxy-alpha-D-galactopyranose | non-polymer | 221.2 | 1 | Chemie (A2G) | |||
| 4 | F (B) | beta-D-galactopyranose | non-polymer | 180.2 | 1 | Chemie (GAL) | |||
| 5 | G (B) | alpha-L-fucopyranose | non-polymer | 164.2 | 1 | Chemie (FUC) | |||
| 6 | H, I (B) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 7 | J, K (B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 8 | L, M (A, B) | water | water | 18.0 | 598 | Chemie (HOH) |
Sequence modifications
A, B: 64 - 224 (UniProt: Q01641)
| PDB | External Database | Details |
|---|---|---|
| Asp 149 | Tyr 149 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 36758.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1059.0 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 820.6 | |
| All* | Total formula weight | 38638.3 |
