5CB5
Structural Insights into the Mechanism of Escherichia coli Ymdb
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | R, A, B, C, D... | O-acetyl-ADP-ribose deacetylase | polymer | 183 | 19641.2 | 18 | UniProt (P0A8D6) Pfam (PF01661) In PDB | Escherichia coli K12 | Regulator of RNase III activity |
2 | P, D, E, Q, G... | ADENOSINE-5-DIPHOSPHORIBOSE | non-polymer | 559.3 | 16 | Chemie (APR) | |||
3 | P, D, E, Q, F... | SULFATE ION | non-polymer | 96.1 | 18 | Chemie (SO4) | |||
4 | C, Q, J | ACETATE ION | non-polymer | 59.0 | 3 | Chemie (ACT) | |||
5 | F, M | [(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanoate | non-polymer | 601.4 | 2 | Chemie (ZOD) | |||
6 | water | water | 18.0 | 214 | Chemie (HOH) |
Sequence modifications
R, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q: 1 - 177 (UniProt: P0A8D6)
PDB | External Database | Details |
---|---|---|
His -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
Ala 25 | Asn 25 | engineered mutation |
Ala 35 | Asp 35 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 18 |
Total formula weight | 353541.2 | |
Non-Polymers* | Number of molecules | 39 |
Total formula weight | 12058.0 | |
All* | Total formula weight | 365599.2 |