5BX3
Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with deoxynojirimycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | beta-glucosidase | polymer | 799 | 91794.2 | 1 | UniProt (F6BL85) | Thermoanaerobacterium xylanolyticum LX-11 | |
| 2 | B (A) | 1-DEOXYNOJIRIMYCIN | non-polymer | 163.2 | 1 | Chemie (NOJ) PubChem (1374) PubChem (29435) PubChem (44387838) PubChem (72258) PubChem (46780624) PubChem (46783361) PubChem (58195791) PubChem (58241649) PubChem (58622819) PubChem (59892309) PubChem (59928089) PubChem (68012331) PubChem (68197421) PubChem (68197422) PubChem (68226300) PubChem (70254323) PubChem (452001) PubChem (89057096) PubChem (89288875) PubChem (90298233) PubChem (90298234) PubChem (176077) PubChem (5387598) PubChem (6603829) PubChem (6604844) PubChem (117948891) PubChem (118458168) PubChem (13018786) PubChem (10329607) PubChem (10352016) PubChem (10702150) PubChem (10888248) PubChem (11094965) PubChem (11105683) PubChem (11240664) PubChem (11957613) PubChem (13018788) PubChem (173365510) PubChem (173729950) PubChem (130756880) PubChem (131019201) PubChem (132769969) PubChem (133673282) PubChem (134694855) PubChem (159481540) PubChem (168093369) PubChem (173809871) PubChem (174403809) PubChem (175474820) | |||
| 3 | C, D, E, F, G... (A) | GLYCEROL | non-polymer | 92.1 | 15 | Chemie (GOL) PubChem (753) | |||
| 4 | R (A) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) PubChem (271) | |||
| 5 | S (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 6 | T (A) | water | water | 18.0 | 441 | Chemie (HOH) |
Sequence modifications
A: 19 - 806 (UniProt: F6BL85)
| PDB | External Database | Details |
|---|---|---|
| Ala -2 | - | expression tag |
| Met -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Leu 807 | - | expression tag |
| Glu 808 | - | expression tag |
| His 809 | - | expression tag |
| His 810 | - | expression tag |
| His 811 | - | expression tag |
| His 812 | - | expression tag |
| His 813 | - | expression tag |
| His 814 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 91794.2 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1646.7 | |
| All* | Total formula weight | 93440.9 |
