5AY8
Crystal structure of human nucleosome containing H3.Y
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | H3.Y | polymer | 139 | 15736.5 | 2 | Pfam (PF00125) UniProt (by SIFTS) (P0DPK2) | Homo sapiens (Human) | |
| 2 | B, F (B, F) | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) | Homo sapiens (Human) | |
| 3 | C, G (C, G) | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 2 | UniProt (P04908) Pfam (PF00125) Pfam (PF16211) | Homo sapiens (Human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
| 4 | D, H (D, H) | Histone H2B type 1-J | polymer | 129 | 14217.5 | 2 | UniProt (P06899) Pfam (PF00125) | Homo sapiens (Human) | Histone H2B.1,Histone H2B.r,H2B/r |
| 5 | I, J (I, J) | DNA (146-MER) | polymer | 146 | 45053.9 | 2 | Homo sapiens (Human) | ||
| 6 | K, L, M, N, O... (A, G, I, J) | MANGANESE (II) ION | non-polymer | 54.9 | 8 | Chemie (MN) | |||
| 7 | S, T (J) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 8 | U, V, W, X (D, E, G, J) | water | water | 18.0 | 8 | Chemie (HOH) |
Sequence modifications
B, F: 0 - 102 (UniProt: P62805)
C, G: 0 - 129 (UniProt: P04908)
D, H: 0 - 125 (UniProt: P06899)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 202264.8 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 510.4 | |
| All* | Total formula weight | 202775.2 |
