5AA0
Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA | 23S ribosomal RNA | polymer | 2889 | 939567.2 | 1 | GenBank (37223181) | Thermus thermophilus HB8 | |
2 | AB | 5S ribosomal RNA | polymer | 123 | 39846.8 | 1 | GenBank (46197919) | Thermus thermophilus HB8 | |
3 | AC | 50S ribosomal protein L1 | polymer | 228 | 24736.5 | 1 | UniProt (Q72GV9) Pfam (PF00687) UniProt (by SIFTS) (Q5SLP7) In PDB | Thermus thermophilus HB8 | |
4 | AD | 50S ribosomal protein L2 | polymer | 272 | 30102.0 | 1 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) In PDB | Thermus thermophilus HB8 | |
5 | AE | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 1 | UniProt (Q72I04) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) In PDB | Thermus thermophilus HB8 | |
6 | AF | 50S ribosomal protein L4 | polymer | 208 | 23011.5 | 1 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus HB8 | L1e |
7 | AG | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 1 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus HB8 | |
8 | AH | 50S ribosomal protein L6 | polymer | 174 | 18864.0 | 1 | UniProt (Q72I19) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) In PDB | Thermus thermophilus HB8 | |
9 | AK | 50S ribosomal protein L13 | polymer | 139 | 15796.7 | 1 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) In PDB | Thermus thermophilus HB8 | |
10 | AL | 50S ribosomal protein L14 | polymer | 122 | 13309.6 | 1 | UniProt (Q72I14) Pfam (PF00238) UniProt (by SIFTS) (Q5SHP8) In PDB | Thermus thermophilus HB8 | |
11 | AM | 50S ribosomal protein L15 | polymer | 145 | 15743.4 | 1 | UniProt (Q72I23) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) In PDB | Thermus thermophilus HB8 | |
12 | AN | 50S ribosomal protein L16 | polymer | 136 | 15364.0 | 1 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus HB8 | |
13 | AO | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 1 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) In PDB | Thermus thermophilus HB8 | |
14 | AP | 50S ribosomal protein L18 | polymer | 110 | 12437.6 | 1 | UniProt (Q72I20) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) In PDB | Thermus thermophilus HB8 | |
15 | AQ | 50S ribosomal protein L19 | polymer | 117 | 13860.2 | 1 | UniProt (Q72JU9) Pfam (PF01245) UniProt (by SIFTS) (P60490) In PDB | Thermus thermophilus HB8 | |
16 | AR | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 1 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) In PDB | Thermus thermophilus HB8 | |
17 | AS | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 1 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) In PDB | Thermus thermophilus HB8 | |
18 | AT | 50S ribosomal protein L22 | polymer | 110 | 12483.7 | 1 | UniProt (Q72I09) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) In PDB | Thermus thermophilus HB8 | |
19 | AU | 50S ribosomal protein L23 | polymer | 94 | 10499.4 | 1 | UniProt (Q72I06) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) In PDB | Thermus thermophilus HB8 | |
20 | AV | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 1 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) In PDB | Thermus thermophilus HB8 | |
21 | AW | 50S ribosomal protein L25 | polymer | 180 | 20367.5 | 1 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) In PDB | Thermus thermophilus HB8 | General stress protein CTC |
22 | AX | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 1 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus HB8 | |
23 | AY | 50S ribosomal protein L29 | polymer | 67 | 8112.6 | 1 | UniProt (Q9LCY4) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) In PDB | Thermus thermophilus HB8 | |
24 | AZ | 50S ribosomal protein L30 | polymer | 59 | 6667.9 | 1 | UniProt (Q72I22) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) In PDB | Thermus thermophilus HB8 | |
25 | Aa | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 1 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) In PDB | Thermus thermophilus HB8 | |
26 | Ab | 50S ribosomal protein L32 | polymer | 57 | 6390.6 | 1 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus HB8 | |
27 | Ac | 50S ribosomal protein L33 | polymer | 49 | 6115.3 | 1 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) In PDB | Thermus thermophilus HB8 | |
28 | Ad | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 1 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus HB8 | |
29 | Ae | 50S ribosomal protein L35 | polymer | 64 | 7377.1 | 1 | UniProt (Q72L77) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) In PDB | Thermus thermophilus HB8 | |
30 | Af | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 1 | UniProt (Q72I28) Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) In PDB | Thermus thermophilus HB8 | |
31 | AI | 50S ribosomal protein L10 | polymer | 153 | 16427.1 | 1 | UniProt (Q72GS1) Pfam (PF00466) UniProt (by SIFTS) (Q8VVE3) In PDB | Thermus thermophilus HB8 | |
32 | AJ | 50S ribosomal protein L11 | polymer | 134 | 14169.5 | 1 | UniProt (P62442) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (Q5SLP6) In PDB | Thermus thermophilus HB8 | |
33 | Ag | Unknown peptide | polymer | 128 | 10911.4 | 1 | Thermus thermophilus HB8 | ||
34 | BA | 16S ribosomal RNA | polymer | 1515 | 491777.1 | 1 | GenBank (155076) | Thermus thermophilus HB8 | |
35 | BF | 30S ribosomal protein S2 | polymer | 234 | 26987.3 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus HB8 | |
36 | BG | 30S ribosomal protein S3 | polymer | 206 | 22862.4 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus HB8 | |
37 | BH | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus HB8 | |
38 | BI | 30S ribosomal protein S5 | polymer | 150 | 16331.1 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus HB8 | |
39 | BJ | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus HB8 | TS9 |
40 | BK | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus HB8 | |
41 | BL | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus HB8 | |
42 | BM | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus HB8 | |
43 | BN | 30S ribosomal protein S10 | polymer | 98 | 11299.2 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus HB8 | |
44 | BO | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus HB8 | |
45 | BP | 30S ribosomal protein S12 | polymer | 124 | 13804.3 | 1 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus HB8 | |
46 | BQ | 30S ribosomal protein S13 | polymer | 114 | 13037.2 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus HB8 | |
47 | BR | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus HB8 | |
48 | BS | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus HB8 | |
49 | BT | 30S ribosomal protein S16 | polymer | 83 | 9924.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus HB8 | |
50 | BU | 30S ribosomal protein S17 | polymer | 104 | 12193.5 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | Thermus thermophilus HB8 | |
51 | BV | 30S ribosomal protein S18 | polymer | 73 | 8497.2 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus HB8 | |
52 | BW | 30S ribosomal protein S19 | polymer | 80 | 9203.7 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus HB8 | |
53 | BX | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus HB8 | |
54 | BY | 30S ribosomal protein Thx | polymer | 24 | 2960.5 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus HB8 | S31 |
55 | BC | tRNA chain 1 | polymer | 76 | 24485.5 | 1 | Thermus thermophilus HB8 | ||
56 | BD, BE | tRNA chain 2 | polymer | 75 | 24156.3 | 2 | Thermus thermophilus HB8 | ||
57 | BZ | GTP-binding protein | polymer | 605 | 67110.1 | 1 | Pfam (PF00009) Pfam (PF03144) Pfam (PF00679) Pfam (PF21018) UniProt (by SIFTS) (P0A3B2) In PDB | Thermus thermophilus HB8 | |
58 | AA, BA | NEOMYCIN | non-polymer | 614.6 | 2 | Chemie (NMY) | |||
59 | AA | 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate) | non-polymer | 346.2 | 2 | Chemie (8AN) | |||
60 | BZ | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) |
Sequence modifications
AA: 1 - 2902 (GenBank: 37223181)
BU: 2 - 105 (UniProt: Q5SHP7)
PDB | External Database | Details |
---|---|---|
- | C 696 | deletion |
- | G 697 | deletion |
- | C 698 | deletion |
- | A 699 | deletion |
- | A 700 | deletion |
- | G 701 | deletion |
- | C 702 | deletion |
- | G 703 | deletion |
- | G 704 | deletion |
- | G 705 | deletion |
- | C 706 | deletion |
- | C 707 | deletion |
- | G 708 | deletion |
- | C 709 | deletion |
- | A 710 | deletion |
- | C 711 | deletion |
- | G 712 | deletion |
- | C 713 | deletion |
- | G 714 | deletion |
- | G 715 | deletion |
- | C 716 | deletion |
- | C 717 | deletion |
G 1134 | Unk 1201 | conflict |
PDB | External Database | Details |
---|---|---|
Gln 96 | Glu 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 58 |
Total formula weight | 2308579.8 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 2443.0 | |
All* | Total formula weight | 2311022.8 |