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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5AA0

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(AA)		23S ribosomal RNApolymer2889939567.21GenBank (37223181)Thermus thermophilus HB8
2B
(AB)		5S ribosomal RNApolymer12339846.81GenBank (46197919)Thermus thermophilus HB8
3C
(AC)		50S ribosomal protein L1polymer22824736.51UniProt (Q72GV9)
Pfam (PF00687)
UniProt (by SIFTS) (Q5SLP7)		Thermus thermophilus HB8
4D
(AD)		50S ribosomal protein L2polymer27230102.01UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60405)		Thermus thermophilus HB8
5E
(AE)		50S ribosomal protein L3polymer20622450.21UniProt (Q72I04)
Pfam (PF00297)
UniProt (by SIFTS) (Q5SHN8)		Thermus thermophilus HB8
6F
(AF)		50S ribosomal protein L4polymer20823011.51UniProt (Q5SHN9)
Pfam (PF00573)		Thermus thermophilus HB8L1e
7G
(AG)		50S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)		Thermus thermophilus HB8
8H
(AH)		50S ribosomal protein L6polymer17418864.01UniProt (Q72I19)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)		Thermus thermophilus HB8
9I
(AK)		50S ribosomal protein L13polymer13915796.71UniProt (Q72IN1)
Pfam (PF00572)
UniProt (by SIFTS) (P60488)		Thermus thermophilus HB8
10J
(AL)		50S ribosomal protein L14polymer12213309.61UniProt (Q72I14)
Pfam (PF00238)
UniProt (by SIFTS) (Q5SHP8)		Thermus thermophilus HB8
11K
(AM)		50S ribosomal protein L15polymer14515743.41UniProt (Q72I23)
Pfam (PF00828)
UniProt (by SIFTS) (Q5SHQ7)		Thermus thermophilus HB8
12L
(AN)		50S ribosomal protein L16polymer13615364.01UniProt (P60489)
Pfam (PF00252)		Thermus thermophilus HB8
13M
(AO)		50S ribosomal protein L17polymer11713619.01UniProt (Q72I33)
Pfam (PF01196)
UniProt (by SIFTS) (Q9Z9H5)		Thermus thermophilus HB8
14N
(AP)		50S ribosomal protein L18polymer11012437.61UniProt (Q72I20)
Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)		Thermus thermophilus HB8
15O
(AQ)		50S ribosomal protein L19polymer11713860.21UniProt (Q72JU9)
Pfam (PF01245)
UniProt (by SIFTS) (P60490)		Thermus thermophilus HB8
16P
(AR)		50S ribosomal protein L20polymer11713648.11UniProt (Q72L76)
Pfam (PF00453)
UniProt (by SIFTS) (P60491)		Thermus thermophilus HB8
17Q
(AS)		50S ribosomal protein L21polymer10111069.21UniProt (Q72HR2)
Pfam (PF00829)
UniProt (by SIFTS) (P60492)		Thermus thermophilus HB8
18R
(AT)		50S ribosomal protein L22polymer11012483.71UniProt (Q72I09)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)		Thermus thermophilus HB8
19S
(AU)		50S ribosomal protein L23polymer9410499.41UniProt (Q72I06)
Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)		Thermus thermophilus HB8
20T
(AV)		50S ribosomal protein L24polymer11012085.61UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)		Thermus thermophilus HB8
21U
(AW)		50S ribosomal protein L25polymer18020367.51UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q5SHZ1)		Thermus thermophilus HB8General stress protein CTC
22V
(AX)		50S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)		Thermus thermophilus HB8
23W
(AY)		50S ribosomal protein L29polymer678112.61UniProt (Q9LCY4)
Pfam (PF00831)
UniProt (by SIFTS) (Q5SHP6)		Thermus thermophilus HB8
24X
(AZ)		50S ribosomal protein L30polymer596667.91UniProt (Q72I22)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)		Thermus thermophilus HB8
25Y
(Aa)		50S ribosomal protein L31polymer718300.51UniProt (Q72JR0)
Pfam (PF01197)
UniProt (by SIFTS) (Q5SJE1)		Thermus thermophilus HB8
26Z
(Ab)		50S ribosomal protein L32polymer576390.61UniProt (P80339)
Pfam (PF01783)		Thermus thermophilus HB8
27AA
(Ac)		50S ribosomal protein L33polymer496115.31UniProt (Q72GW3)
Pfam (PF00471)
UniProt (by SIFTS) (P35871)		Thermus thermophilus HB8
28BA
(Ad)		50S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)		Thermus thermophilus HB8
29CA
(Ae)		50S ribosomal protein L35polymer647377.11UniProt (Q72L77)
Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)		Thermus thermophilus HB8
30DA
(Af)		50S ribosomal protein L36polymer374435.41UniProt (Q72I28)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)		Thermus thermophilus HB8
31EA
(AI)		50S ribosomal protein L10polymer15316427.11UniProt (Q72GS1)
Pfam (PF00466)
UniProt (by SIFTS) (Q8VVE3)		Thermus thermophilus HB8
32FA
(AJ)		50S ribosomal protein L11polymer13414169.51UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (Q5SLP6)		Thermus thermophilus HB8
33GA
(Ag)		Unknown peptidepolymer12810911.41Thermus thermophilus HB8
34HA
(BA)		16S ribosomal RNApolymer1515491777.11GenBank (155076)Thermus thermophilus HB8
35IA
(BF)		30S ribosomal protein S2polymer23426987.31UniProt (P80371)
Pfam (PF00318)		Thermus thermophilus HB8
36JA
(BG)		30S ribosomal protein S3polymer20622862.41UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)		Thermus thermophilus HB8
37KA
(BH)		30S ribosomal protein S4polymer20824242.31UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)		Thermus thermophilus HB8
38LA
(BI)		30S ribosomal protein S5polymer15016331.11UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)		Thermus thermophilus HB8
39MA
(BJ)		30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)		Thermus thermophilus HB8TS9
40NA
(BK)		30S ribosomal protein S7polymer15517919.81UniProt (P17291)
Pfam (PF00177)		Thermus thermophilus HB8
41OA
(BL)		30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)		Thermus thermophilus HB8
42PA
(BM)		30S ribosomal protein S9polymer12714279.41UniProt (P80374)
Pfam (PF00380)		Thermus thermophilus HB8
43QA
(BN)		30S ribosomal protein S10polymer9811299.21UniProt (Q5SHN7)
Pfam (PF00338)		Thermus thermophilus HB8
44RA
(BO)		30S ribosomal protein S11polymer11912606.41UniProt (P80376)
Pfam (PF00411)		Thermus thermophilus HB8
45SA
(BP)		30S ribosomal protein S12polymer12413804.31UniProt (Q5SHN3)
Pfam (PF00164)		Thermus thermophilus HB8
46TA
(BQ)		30S ribosomal protein S13polymer11413037.21UniProt (P80377)
Pfam (PF00416)		Thermus thermophilus HB8
47UA
(BR)		30S ribosomal protein S14 type Zpolymer607027.51UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)		Thermus thermophilus HB8
48VA
(BS)		30S ribosomal protein S15polymer8810447.21UniProt (Q5SJ76)
Pfam (PF00312)		Thermus thermophilus HB8
49WA
(BT)		30S ribosomal protein S16polymer839924.51UniProt (Q5SJH3)
Pfam (PF00886)		Thermus thermophilus HB8
50XA
(BU)		30S ribosomal protein S17polymer10412193.51UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)		Thermus thermophilus HB8
51YA
(BV)		30S ribosomal protein S18polymer738497.21UniProt (Q5SLQ0)
Pfam (PF01084)		Thermus thermophilus HB8
52ZA
(BW)		30S ribosomal protein S19polymer809203.71UniProt (Q5SHP2)
Pfam (PF00203)		Thermus thermophilus HB8
53AB
(BX)		30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)		Thermus thermophilus HB8
54BB
(BY)		30S ribosomal protein Thxpolymer242960.51UniProt (Q5SIH3)
Pfam (PF17070)		Thermus thermophilus HB8S31
55CB
(BC)		tRNA chain 1polymer7624485.51Thermus thermophilus HB8
56DB, EB
(BD, BE)		tRNA chain 2polymer7524156.32Thermus thermophilus HB8
57FB
(BZ)		GTP-binding proteinpolymer60567110.11Pfam (PF00009)
Pfam (PF03144)
Pfam (PF00679)
Pfam (PF21018)
UniProt (by SIFTS) (P0A3B2)		Thermus thermophilus HB8
58GB, JB
(AA, BA)		NEOMYCINnon-polymer614.62Chemie (NMY)
59HB, IB
(AA)		3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate)non-polymer346.22Chemie (8AN)
60KB
(BZ)		PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
AA: 1 - 2902 (GenBank: 37223181)
PDBExternal DatabaseDetails
-C 696deletion
-G 697deletion
-C 698deletion
-A 699deletion
-A 700deletion
-G 701deletion
-C 702deletion
-G 703deletion
-G 704deletion
-G 705deletion
-C 706deletion
-C 707deletion
-G 708deletion
-C 709deletion
-A 710deletion
-C 711deletion
-G 712deletion
-C 713deletion
-G 714deletion
-G 715deletion
-C 716deletion
-C 717deletion
G 1134Unk 1201conflict
BU: 2 - 105 (UniProt: Q5SHP7)
PDBExternal DatabaseDetails
Gln 96Glu 96conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2308579.8
Non-Polymers*Number of molecules5
Total formula weight2443.0
All*Total formula weight2311022.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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