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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5A9Z

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA23S ribosomal RNApolymer2889939567.21GenBank (37223181)Thermus thermophilus HB8
2AB5S ribosomal RNApolymer12339846.81GenBank (55771382)Thermus thermophilus HB8
3AC50S ribosomal protein L1polymer22824736.51UniProt (Q72GV9)
Pfam (PF00687)
UniProt (by SIFTS) (Q5SLP7)
In PDB		Thermus thermophilus HB8
4AD50S ribosomal protein L2polymer27230102.01UniProt (Q72I07)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60405)
In PDB		Thermus thermophilus HB8
5AE50S ribosomal protein L3polymer20622450.21UniProt (Q72I04)
Pfam (PF00297)
UniProt (by SIFTS) (Q5SHN8)
In PDB		Thermus thermophilus HB8
6AF50S ribosomal protein L4polymer20823011.51UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus HB8L1e
7AG50S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus HB8
8AH50S ribosomal protein L6polymer17418864.01UniProt (Q72I19)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB		Thermus thermophilus HB8
9AI50S ribosomal protein L10polymer15316427.11UniProt (Q72GS1)
Pfam (PF00466)
UniProt (by SIFTS) (Q8VVE3)
In PDB		Thermus thermophilus HB8
10AJ50S ribosomal protein L11polymer13414169.51UniProt (P62442)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (Q5SLP6)
In PDB		Thermus thermophilus HB8
11AK50S ribosomal protein L13polymer13915796.71UniProt (Q72IN1)
Pfam (PF00572)
UniProt (by SIFTS) (P60488)
In PDB		Thermus thermophilus HB8
12AL50S ribosomal protein L14polymer12213309.61UniProt (Q72I14)
Pfam (PF00238)
UniProt (by SIFTS) (Q5SHP8)
In PDB		Thermus thermophilus HB8
13AM50S ribosomal protein L15polymer14515743.41UniProt (Q72I23)
Pfam (PF00828)
UniProt (by SIFTS) (Q5SHQ7)
In PDB		Thermus thermophilus HB8
14AN50S ribosomal protein L16polymer13615364.01UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus HB8
15AO50S ribosomal protein L17polymer11713619.01UniProt (Q72I33)
Pfam (PF01196)
UniProt (by SIFTS) (Q9Z9H5)
In PDB		Thermus thermophilus HB8
16AP50S ribosomal protein L18polymer11012437.61UniProt (Q72I20)
Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)
In PDB		Thermus thermophilus HB8
17AQ50S ribosomal protein L19polymer11713860.21UniProt (Q72JU9)
Pfam (PF01245)
UniProt (by SIFTS) (P60490)
In PDB		Thermus thermophilus HB8
18AR50S ribosomal protein L20polymer11713648.11UniProt (Q72L76)
Pfam (PF00453)
UniProt (by SIFTS) (P60491)
In PDB		Thermus thermophilus HB8
19AS50S ribosomal protein L21polymer10111069.21UniProt (Q72HR2)
Pfam (PF00829)
UniProt (by SIFTS) (P60492)
In PDB		Thermus thermophilus HB8
20AT50S ribosomal protein L22polymer11012483.71UniProt (Q72I09)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus HB8
21AU50S ribosomal protein L23polymer9410499.41UniProt (Q72I06)
Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)
In PDB		Thermus thermophilus HB8
22AV50S ribosomal protein L24polymer11012085.61UniProt (Q72I15)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)
In PDB		Thermus thermophilus HB8
23AW50S ribosomal protein L25polymer18020367.51UniProt (Q72IA7)
Pfam (PF01386)
Pfam (PF14693)
UniProt (by SIFTS) (Q5SHZ1)
In PDB		Thermus thermophilus HB8General stress protein CTC
24AX50S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus HB8
25AY50S ribosomal protein L29polymer678112.61UniProt (Q9LCY4)
Pfam (PF00831)
UniProt (by SIFTS) (Q5SHP6)
In PDB		Thermus thermophilus HB8
26AZ50S ribosomal protein L30polymer596667.91UniProt (Q72I22)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus HB8
27Aa50S ribosomal protein L31polymer718300.51UniProt (Q72JR0)
Pfam (PF01197)
UniProt (by SIFTS) (Q5SJE1)
In PDB		Thermus thermophilus HB8
28Ab50S ribosomal protein L32polymer576390.61UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus HB8
29Ac50S ribosomal protein L33polymer496115.31UniProt (Q72GW3)
Pfam (PF00471)
UniProt (by SIFTS) (P35871)
In PDB		Thermus thermophilus HB8
30Ad50S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus HB8
31Ae50S ribosomal protein L35polymer647377.11UniProt (Q72L77)
Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)
In PDB		Thermus thermophilus HB8
32Af50S ribosomal protein L36polymer374435.41UniProt (Q72I28)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)
In PDB		Thermus thermophilus HB8
33AgUnknown peptidepolymer12810911.41Thermus thermophilus HB8
34BA16S ribosomal RNApolymer1515491777.11GenBank (155076)Thermus thermophilus HB8
35BF30S ribosomal protein S2polymer23426987.31UniProt (P62662)
Pfam (PF00318)
UniProt (by SIFTS) (P80371)
In PDB		Thermus thermophilus HB8
36BG30S ribosomal protein S3polymer20622862.41UniProt (P62663)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P80372)
In PDB		Thermus thermophilus HB8
37BH30S ribosomal protein S4polymer20824242.31UniProt (P62664)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P80373)
In PDB		Thermus thermophilus HB8
38BI30S ribosomal protein S5polymer15016331.11UniProt (P62665)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB		Thermus thermophilus HB8
39BJ30S ribosomal protein S6polymer10111988.81UniProt (P62666)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		Thermus thermophilus HB8
40BK30S ribosomal protein S7polymer15517919.81UniProt (P62667)
Pfam (PF00177)
UniProt (by SIFTS) (P17291)
In PDB		Thermus thermophilus HB8
41BL30S ribosomal protein S8polymer13815868.61UniProt (P62668)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus HB8
42BM30S ribosomal protein S9polymer12714279.41UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus HB8
43BN30S ribosomal protein S10polymer9811299.21UniProt (P62653)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB		Thermus thermophilus HB8
44BO30S ribosomal protein S11polymer11912606.41UniProt (P62654)
Pfam (PF00411)
UniProt (by SIFTS) (P80376)
In PDB		Thermus thermophilus HB8
45BP30S ribosomal protein S12polymer12413804.31UniProt (P61941)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB		Thermus thermophilus HB8
46BQ30S ribosomal protein S13polymer11413037.21UniProt (P62655)
Pfam (PF00416)
UniProt (by SIFTS) (P80377)
In PDB		Thermus thermophilus HB8
47BR30S ribosomal protein S14 type Zpolymer607027.51UniProt (P62656)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus HB8
48BS30S ribosomal protein S15polymer8810447.21UniProt (P62657)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		Thermus thermophilus HB8
49BT30S ribosomal protein S16polymer839924.51UniProt (P62238)
Pfam (PF00886)
UniProt (by SIFTS) (Q5SJH3)
In PDB		Thermus thermophilus HB8
50BU30S ribosomal protein S17polymer10412193.51UniProt (P62658)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus HB8
51BV30S ribosomal protein S18polymer738483.21UniProt (P80382)
Pfam (PF01084)
UniProt (by SIFTS) (Q5SLQ0)
In PDB		Thermus thermophilus HB8
52BW30S ribosomal protein S19polymer809203.71UniProt (P62660)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus HB8
53BX30S ribosomal protein S20polymer9910921.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus HB8
54BY30S ribosomal protein Thxpolymer242960.51UniProt (F6DII0)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus HB8
55CABipApolymer59365979.81Pfam (PF00009)
Pfam (PF03144)
Pfam (PF00679)
Pfam (PF21018)
UniProt (by SIFTS) (P0A3B2)
In PDB		Thermus thermophilus HB8
56AA, BANEOMYCINnon-polymer614.62Chemie (NMY)
57CAPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
AA: 1 - 2902 (GenBank: 37223181)
PDBExternal DatabaseDetails
-C 696deletion
-G 697deletion
-C 698deletion
-A 699deletion
-A 700deletion
-G 701deletion
-C 702deletion
-G 703deletion
-G 704deletion
-G 705deletion
-C 706deletion
-C 707deletion
-G 708deletion
-C 709deletion
-A 710deletion
-C 711deletion
-G 712deletion
-C 713deletion
-G 714deletion
-G 715deletion
-C 716deletion
-C 717deletion
G 1134Unk 1201conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains55
Total formula weight2234637.3
Non-Polymers*Number of molecules3
Total formula weight1750.5
All*Total formula weight2236387.8
*Water molecules are not included.

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PDB entries from 2024-07-24

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