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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4YPB

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1QA, XA16S rRNApolymer1522493958.32GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2QB, XB30S ribosomal protein S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3QC, XC30S ribosomal protein S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4QD, XD30S ribosomal protein S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5QE, XE30S ribosomal protein S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6QF, XF30S ribosomal protein S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
7QG, XG30S ribosomal protein S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8QH, XH30S ribosomal protein S8polymer13815868.62UniProt (Q5SHQ2)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9QI, XI30S ribosomal protein S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10QJ, XJ30S ribosomal protein S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11QK, XK30S ribosomal protein S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12QL, XL30S ribosomal protein S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13QM, XM30S ribosomal protein S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14QN, XN30S ribosomal protein S14polymer617158.72UniProt (Q5SHQ1)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15QO, XO30S ribosomal protein S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16QP, XP30S ribosomal protein S16polymer8810410.02UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17QQ, XQ30S ribosomal protein S17polymer10512325.72UniProt (Q5SHP7)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18QR, XR30S ribosomal protein S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19QS, XS30S ribosomal protein S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20QT, XT30S ribosomal protein S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21QU, XU30S ribosomal protein Thxpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
22QV, QW, XV, XWtRNA fMetpolymer7724802.84GenBank (748267869)Escherichia coli
23QX, XXmessenger RNApolymer258239.12Escherichia coli
24QY, XYHost inhibition of growth Bpolymer11713575.32UniProt (Q7A225)
Pfam (PF05015)
In PDB		Proteus vulgaris
25RA, YA23S rRNApolymer2916948240.62GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26RB, YB5S rRNApolymer12440152.92GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27RD, YD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28RE, YE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29RF, YF50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
30RG, YG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31RH, YH50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32RI, YI50S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33RN, YN50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34RO, YO50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35RP, YP50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36RQ, YQ50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
37RR, YR50S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38RS, YS50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL24
39RT, YT50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40RU, YU50S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41RV, YV50S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42RW, YW50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43RX, YX50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44RY, YY50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45RZ, YZ50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL5
46R0, Y050S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47R1, Y150S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48R2, Y250S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49R3, Y350S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50R4, Y450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51R5, Y550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52R6, Y650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53R7, Y750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54R8, Y850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
55R9, Y950S ribosomal protein L36polymer374435.42UniProt (Q5SHR2)
Pfam (PF00444)
In PDB		Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Ribosomal protein B
56RA, YA, RV, YE, XA...MAGNESIUM IONnon-polymer24.31308Chemie (MG)
57QD, QN, XD, XNZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
QY, XY: 2 - 91 (UniProt: Q7A225)
PDBExternal DatabaseDetails
Met 0-initiating methionine
Gly 1-expression tag
Lys 92-expression tag
Leu 93-expression tag
Gly 94-expression tag
Pro 95-expression tag
Glu 96-expression tag
Gln 97-expression tag
Lys 98-expression tag
Leu 99-expression tag
Ile 100-expression tag
Ser 101-expression tag
Glu 102-expression tag
Glu 103-expression tag
Asp 104-expression tag
Leu 105-expression tag
Asn 106-expression tag
Ser 107-expression tag
Ala 108-expression tag
Val 109-expression tag
Asp 110-expression tag
His 111-expression tag
His 112-expression tag
His 113-expression tag
His 114-expression tag
His 115-expression tag
His 116-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4482263.0
Non-Polymers*Number of molecules1312
Total formula weight32052.6
All*Total formula weight4514315.6
*Water molecules are not included.

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