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4YM7

RNA polymerase I structure with an alternative dimer hinge

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, BA, CA, DA, EA...DNA-directed RNA polymerase I subunit RPA190polymer1664186677.06UniProt (P10964)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
In PDB
Saccharomyces cerevisiae (Baker's yeast)DNA-directed RNA polymerase I 190 kDa polypeptide,A190,DNA-directed RNA polymerase I largest subunit
2AB, BB, CB, DB, EB...DNA-directed RNA polymerase I subunit RPA135polymer1203135910.36UniProt (P22138)
Pfam (PF00562)
Pfam (PF04560)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF06883)
In PDB
Saccharomyces cerevisiae (Baker's yeast)DNA-directed RNA polymerase I 135 kDa polypeptide,A135,DNA-directed RNA polymerase I polypeptide 2,RNA polymerase I subunit 2
3AC, BC, CC, DC, EC...DNA-directed RNA polymerases I and III subunit RPAC1polymer33537732.66UniProt (P07703)
Pfam (PF01193)
Pfam (PF01000)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I and III subunit AC1,C37,DNA-directed RNA polymerases I and III 40 kDa polypeptide,C40
4AD, BD, CD, DD, ED...DNA-directed RNA polymerase I subunit RPA14polymer13714599.16UniProt (P50106)
Pfam (PF08203)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A14,DNA-directed RNA polymerase I 14 kDa polypeptide
5AE, BE, CE, DE, EE...DNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21525117.16UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide
6AF, BF, CF, DF, EF...DNA-directed RNA polymerases I, II, and III subunit RPABC2polymer15517931.86UniProt (P20435)
Pfam (PF01192)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I,II,and III subunit ABC2,ABC23,DNA-directed RNA polymerases I,and III 23 kDa polypeptide
7AG, AO, BG, BO, CG...DNA-directed RNA polymerase I subunit RPA43polymer32636264.912UniProt (P46669)
Pfam (PF03876)
Pfam (PF17875)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A43,DNA-directed DNA-dependent RNA polymerase 36 kDa polypeptide
8AH, BH, CH, DH, EH...DNA-directed RNA polymerases I, II, and III subunit RPABC3polymer14616525.46UniProt (P20436)
Pfam (PF03870)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide
9AI, BI, CI, DI, EI...DNA-directed RNA polymerase I subunit RPA12polymer12513676.66UniProt (P32529)
Pfam (PF02150)
Pfam (PF01096)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A12,A12.2,DNA-directed RNA polymerase I 13.7 kDa polypeptide
10AJ, BJ, CJ, DJ, EJ...DNA-directed RNA polymerases I, II, and III subunit RPABC5polymer708290.76UniProt (P22139)
Pfam (PF01194)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide
11AK, BK, CK, DK, EK...DNA-directed RNA polymerases I and III subunit RPAC2polymer14216167.96UniProt (P28000)
Pfam (PF13656)
Pfam (PF01193)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I and III subunit AC2,AC19,DNA-directed RNA polymerases I and III 16 kDa polypeptide,RPA19
12AL, BL, CL, DL, EL...DNA-directed RNA polymerases I, II, and III subunit RPABC4polymer707730.06UniProt (P40422)
Pfam (PF03604)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I,II,and III subunit ABC4,ABC10-alpha
13AM, BM, CM, DM, EM...DNA-directed RNA polymerase I subunit RPA49polymer41546721.76UniProt (Q01080)
Pfam (PF06870)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A49,DNA-directed RNA polymerase I 49 kDa polypeptide
14AN, BN, CN, DN, EN...DNA-directed RNA polymerase I subunit RPA34polymer23326933.56UniProt (P47006)
Pfam (PF08208)
In PDB
Saccharomyces cerevisiae (Baker's yeast)A34,DNA-directed DNA-dependent RNA polymerase 34.5 kDa polypeptide,A34.5
15CA, FJ, FL, CB, CI...ZINC IONnon-polymer65.442Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains90
Total formula weight3759260.3
Non-Polymers*Number of molecules42
Total formula weight2747.2
All*Total formula weight3762007.5
*Water molecules are not included.

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PDB entries from 2024-05-29

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