4YDI
Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | G | Envelope glycoprotein gp160 | polymer | 359 | 39980.1 | 1 | UniProt (O55774) Pfam (PF00516) In PDB | Human immunodeficiency virus 1 | |
2 | H | HEAVY CHAIN OF ANTIBODY Z258-VRC27.01 | polymer | 227 | 24897.0 | 1 | Homo sapiens (Human) | ||
3 | L | LIGHT CHAIN OF ANTIBODY Z258-VRC27.01 | polymer | 210 | 23048.6 | 1 | Homo sapiens (Human) | ||
4 | G, L | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 13 | Chemie (NAG) | |||
5 | G, H | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
6 | H | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
7 | water | water | 18.0 | 19 | Chemie (HOH) |
Sequence modifications
G: 44 - 123 (UniProt: O55774)
G: 199 - 317 (UniProt: O55774)
G: 324 - 492 (UniProt: O55774)
G: 199 - 317 (UniProt: O55774)
PDB | External Database | Details |
---|---|---|
Gly 124 | - | linker |
Gly 198 | - | linker |
PDB | External Database | Details |
---|---|---|
Gly 318 | - | linker |
Gly 319 | - | linker |
Ser 320 | - | linker |
Gly 321 | - | linker |
Ser 322 | - | linker |
Gly 323 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 87925.7 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 3322.0 | |
All* | Total formula weight | 91247.7 |