4YD1
Ternary complex of human DNA Polymerase Mu with 2-nt gapped DNA substrate and an incoming nonhydrolyzable dUMPNPP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA-directed DNA/RNA polymerase mu | polymer | 354 | 39844.2 | 1 | UniProt (Q9NP87) Pfam (PF14716) Pfam (PF10391) Pfam (PF14792) Pfam (PF14791) In PDB | Homo sapiens (Human) | Pol Mu,Terminal transferase |
2 | T | DNA (5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*G)-3') | polymer | 10 | 3054.0 | 1 | Homo sapiens | ||
3 | P | DNA (5'-D(*CP*GP*TP*A)-3') | polymer | 4 | 1190.8 | 1 | Homo sapiens | ||
4 | D | DNA (5'-D(P*GP*CP*CP*G)-3') | polymer | 4 | 1191.8 | 1 | Homo sapiens | ||
5 | A, T | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
6 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
7 | A | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
8 | A | 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE | non-polymer | 467.2 | 1 | Chemie (DUP) | |||
9 | A | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
10 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
11 | water | water | 18.0 | 468 | Chemie (HOH) |
Sequence modifications
A: 134 - 494 (UniProt: Q9NP87)
PDB | External Database | Details |
---|---|---|
Gly 129 | - | expression tag |
Ser 130 | - | expression tag |
Ala 131 | - | expression tag |
Ala 132 | - | expression tag |
Ala 133 | - | expression tag |
- | Pro 398 | deletion |
- | Gly 399 | deletion |
- | Ala 400 | deletion |
- | Ala 401 | deletion |
- | Val 402 | deletion |
- | Gly 403 | deletion |
- | Gly 404 | deletion |
- | Ser 405 | deletion |
- | Thr 406 | deletion |
- | Arg 407 | deletion |
- | Pro 408 | deletion |
- | Cys 409 | deletion |
Gly 410 | Pro 410 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 45280.8 | |
Non-Polymers* | Number of molecules | 13 |
Total formula weight | 1013.2 | |
All* | Total formula weight | 46294.0 |