4XHQ
Re-refinement the crystal structure of Dscam1 isoform 1.34, N-terminal four Ig domains
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Dscam | polymer | 388 | 42880.6 | 1 | UniProt (Q9NBA1) Pfam (PF07679) Pfam (PF13927) UniProt (by SIFTS) (Q0E9H9) In PDB | Drosophila melanogaster (Fruit fly) | |
2 | B | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
3 | C | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
4 | A | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
5 | A | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
6 | A | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
7 | A | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
8 | water | water | 18.0 | 383 | Chemie (HOH) |
Sequence modifications
A: 1 - 388 (UniProt: Q9NBA1)
PDB | External Database | Details |
---|---|---|
Ile 207 | Val 242 | variant |
Ala 211 | Pro 246 | variant |
Arg 213 | Lys 248 | variant |
Thr 214 | Ile 249 | variant |
Pro 215 | Asn 250 | variant |
Ala 216 | Thr 251 | variant |
Val 218 | Thr 253 | variant |
Gln 219 | Tyr 254 | variant |
Leu 222 | Asn 257 | variant |
Glu 223 | Ile 258 | variant |
Leu 224 | Val 259 | variant |
Met 225 | Glu 260 | variant |
Val 226 | Ser 261 | variant |
Ala 227 | Met 262 | variant |
His 228 | Ala 263 | variant |
Thr 229 | Ser 264 | variant |
Ile 230 | Thr 265 | variant |
Ser 231 | Ala 266 | variant |
Leu 232 | Ile 267 | variant |
Phe 239 | Tyr 274 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 42880.6 | |
Branched | Number of molecules | 2 |
Total formula weight | 1497.4 | |
Non-Polymers* | Number of molecules | 13 |
Total formula weight | 702.2 | |
All* | Total formula weight | 45080.1 |