4X7R
Crystal structure of S. aureus TarM G117R mutant in complex with Fondaparinux, alpha-GlcNAc-glycerol and UDP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | TarM | polymer | 493 | 57463.8 | 2 | UniProt (H0AM96) Pfam (PF00534) UniProt (by SIFTS) (A0A0H2WWV6) In PDB | Staphylococcus aureus subsp. aureus 21178 | |
| 2 | C, D | 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside | branched | 1508.3 | 2 | In PDB BIRD (PRD_900028) GlyTouCan (G25282IW) | fondaparinux | ||
| 3 | A, B | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 2 | Chemie (UDP) | |||
| 4 | A, B | (2S)-2,3-dihydroxypropyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside | non-polymer | 295.3 | 2 | Chemie (3YW) | |||
| 5 | water | water | 18.0 | 365 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 493 (UniProt: H0AM96)
| PDB | External Database | Details |
|---|---|---|
| Arg 117 | Gly 117 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 114927.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 3016.5 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1398.9 | |
| All* | Total formula weight | 119343.1 |
