4X62
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1522 | 494170.8 | 1 | GenBank (55771382) | Thermus thermophilus HB8 | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 236 | 27217.5 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 4 | D (D) | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 5 | E (E) | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | F (F) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | TS9 |
| 7 | G (G) | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 8 | H (H) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 9 | I (I) | 30S ribosomal protein S9 | polymer | 127 | 14279.4 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 10 | J (J) | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 11 | K (K) | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 12 | L (L) | 30S ribosomal protein S12 | polymer | 125 | 13921.5 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 13 | M (M) | 30S ribosomal protein S13 | polymer | 118 | 13365.6 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 14 | N (N) | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 15 | O (O) | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 16 | P (P) | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 17 | Q (Q) | 30S ribosomal protein S17 | polymer | 99 | 11722.9 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 18 | R (R) | 30S ribosomal protein S18 | polymer | 73 | 8497.2 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 19 | S (S) | 30S ribosomal protein S19 | polymer | 81 | 9260.8 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 20 | T (T) | 30S ribosomal protein S20 | polymer | 99 | 10921.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 21 | U (U) | 30S ribosomal protein Thx | polymer | 25 | 3089.7 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | S31 |
| 22 | V (a) | RNA (5'-D(*AP*AP*AP*UP*UP*U)-3') | polymer | 6 | 1861.2 | 1 | Thermus thermophilus | ||
| 23 | W (b) | RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3') | polymer | 11 | 3708.4 | 1 | Thermus thermophilus | ||
| 24 | AA, BA, CA, X, Y... (A) | PAROMOMYCIN | non-polymer | 615.6 | 6 | Chemie (PAR) | |||
| 25 | AB, AC, AD, AE, AF... (A, T, b, C, D...) | MAGNESIUM ION | non-polymer | 24.3 | 280 | Chemie (MG) | |||
| 26 | AL, BL, CL, DK, DL... (A, G) | POTASSIUM ION | non-polymer | 39.1 | 29 | Chemie (K) | |||
| 27 | HL, QL (D, N) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 28 | CM, DM, EM, FM, GM... (A, D, E, L, N...) | water | water | 18.0 | 221 | Chemie (HOH) |
Sequence modifications
A: 0 - 1544 (GenBank: 55771382)
| PDB | External Database | Details |
|---|---|---|
| C 1534 | A 132811 | conflict |
| A 1535 | C 132812 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 772946.0 | |
| Non-Polymers* | Number of molecules | 317 |
| Total formula weight | 11763.8 | |
| All* | Total formula weight | 784709.8 |
