4X17
JC Mad-1 polyomavirus VP1 in complex with GD1b oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F, G (F, G) | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid | branched | 600.5 | 2 | In PDB GlyTouCan (G87492XO) | |||
| 3 | BA, DA, FA, GA, H... (D, E, A, B, C) | GLYCEROL | non-polymer | 92.1 | 17 | Chemie (GOL) | |||
| 4 | AA, EA, J, O, P... (D, E, A, B, C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 5 | CA, M (D, A) | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 6 | N (B) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 1 | Chemie (SIA) | |||
| 7 | IA, JA, KA, LA, MA (A, B, C, D, E) | water | water | 18.0 | 1163 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1201.0 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 2387.5 | |
| All* | Total formula weight | 153967.9 |
