4X15
JC Mad-1 polyomavirus VP1 in complex with GM2 oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E | Major capsid protein VP1 | polymer | 272 | 30075.9 | 5 | UniProt (P03089) Pfam (PF00718) In PDB | JC polyomavirus (JCPyV) | Major structural protein VP1 |
| 2 | F, G, H | N-acetyl-alpha-neuraminic acid-(2-3)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 836.7 | 3 | In PDB GlyTouCan (G79389NT) | |||
| 3 | E, A, B, C, D | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 4 | E, A, B, C, D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 14 | Chemie (EDO) | |||
| 5 | D, A | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 6 | water | water | 18.0 | 891 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P03089)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150379.3 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 2510.2 | |
| Non-Polymers* | Number of molecules | 23 |
| Total formula weight | 1591.8 | |
| All* | Total formula weight | 154481.3 |
