Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4X15

JC Mad-1 polyomavirus VP1 in complex with GM2 oligosaccharide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2012-08-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths150.490, 95.680, 129.720
Unit cell angles90.00, 110.30, 90.00
Refinement procedure
Resolution30.000 - 2.110
R-factor0.17387
Rwork0.172
R-free0.20499
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nxg
RMSD bond length0.008
RMSD bond angle1.324
Data reduction softwareXDS
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.160
High resolution limit [Å]2.1102.110
Number of reflections99141
<I/σ(I)>9.12.3
Completeness [%]99.399.3
Redundancy4.23.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M HEPES pH 7.5, 0.2 M KSCN, 12% PEG 3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon