4X12
JC Polyomavirus genotype 3 VP1 in complex with GD1b oligosaccharide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E | Major capsid protein | polymer | 272 | 30033.8 | 5 | UniProt (P90498) Pfam (PF00718) In PDB | JC polyomavirus type 3 (JCPyV) | VP1,VP1 capsid protein |
2 | F, G, H | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid | branched | 600.5 | 3 | In PDB GlyTouCan (G87492XO) | |||
3 | C, D, A, B, E | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
4 | C, D, A, E, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 18 | Chemie (EDO) | |||
5 | C, D, A, E, B | POTASSIUM ION | non-polymer | 39.1 | 10 | Chemie (K) | |||
6 | water | water | 18.0 | 1034 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P90498)
PDB | External Database | Details |
---|---|---|
Gly 18 | - | expression tag |
Ser 19 | - | expression tag |
His 20 | - | expression tag |
Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 150169.0 | |
Branched | Number of molecules | 3 |
Total formula weight | 1801.6 | |
Non-Polymers* | Number of molecules | 37 |
Total formula weight | 2337.1 | |
All* | Total formula weight | 154307.6 |