4X12
JC Polyomavirus genotype 3 VP1 in complex with GD1b oligosaccharide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein | polymer | 272 | 30033.8 | 5 | UniProt (P90498) Pfam (PF00718) | JC polyomavirus type 3 (JCPyV) | VP1,VP1 capsid protein |
| 2 | F, G, H (F, G, H) | N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid | branched | 600.5 | 3 | In PDB GlyTouCan (G87492XO) | |||
| 3 | BA, EA, HA, I, Q... (C, D, A, B, E) | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
| 4 | AA, FA, GA, IA, J... (C, D, A, E, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 18 | Chemie (EDO) | |||
| 5 | CA, DA, LA, MA, N... (C, D, A, E, B) | POTASSIUM ION | non-polymer | 39.1 | 10 | Chemie (K) | |||
| 6 | TA, UA, VA, WA, XA (A, B, C, D, E) | water | water | 18.0 | 1034 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 22 - 289 (UniProt: P90498)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 150169.0 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1801.6 | |
| Non-Polymers* | Number of molecules | 37 |
| Total formula weight | 2337.1 | |
| All* | Total formula weight | 154307.6 |
